Trifolium pratense (red clover): 123881997
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Entry
123881997 CDS
T08949
Name
(RefSeq) probable pectate lyase 16
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
tpra
Trifolium pratense (red clover)
Pathway
tpra00040
Pentose and glucuronate interconversions
tpra01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
tpra00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
123881997
Enzymes [BR:
tpra01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
123881997
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Motif
Pfam:
Pectate_lyase_4
Beta_helix
NosD
Glyco_hydro_28
Motif
Other DBs
NCBI-GeneID:
123881997
NCBI-ProteinID:
XP_045786723
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Position
LG4:complement(48187461..48189279)
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AA seq
392 aa
AA seq
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MTFNKLINSIFWCFILLVVMVTFFTTHVSSTKHSKIEGMQMNVIDQCWRLNPEWRKHRQQ
LAICSVGFVGKMTNNIGNDLIHYKVTDPSDHPLNPRPGTLRYGASRIQGKIWITFQKDMN
IKLEKPLLISSFTTIDGRGVNVHIADNACLMIYKATNIIIHGIRVHHCRPQAAGMVMGPN
GNIISLGQVDGDAIRLVSASKIWIDHNTLFDCQDGLLDVTRGSTDITISNNWFREQNKVM
LLGHDDGFVRDKNMKVTVVYNYFGPNCQQRMPRIRYGYAHVANNLYMGWVQYAIGGNMQP
SLKSQANLFIAPTTGNKEVTWRKSSNGIGDMWEFYSVGDAFENGASFMETKGGQVKKLNY
SPVQNFKVVDAKFVRSLTRSSGVLQCSKTSIC
NT seq
1179 nt
NT seq
+upstream
nt +downstream
nt
atgacttttaataaattaatcaactccatcttttggtgctttattttacttgttgttatg
gtgacatttttcactacacatgttagttctaccaagcactctaagatagaaggcatgcaa
atgaatgtgattgatcaatgttggagactcaatcctgaatggaggaaacatcgacaacaa
cttgccatttgctcggtaggctttgtaggaaaaatgacaaataacataggcaatgaccta
atccattataaagttactgatcctagtgaccaccctttaaacccaagacctggaactttg
agatatggagcttctagaattcaaggtaaaatttggatcacatttcaaaaggatatgaac
attaagcttgagaaaccccttctcattagtagtttcaccaccattgacggtcggggtgtc
aatgttcacattgctgataatgcgtgcttgatgatatataaggcaacaaacataatcatc
catgggattagggttcatcattgtcgacctcaagctgctggaatggtgatgggtcccaat
ggaaatataatttcattgggtcaagtggatggagatgcaattagattggtttcagcttca
aagatttggattgatcataacacactttttgattgccaagatggtcttctagacgttaca
cgaggttccaccgatattacaatctccaacaattggtttagagagcaaaataaggttatg
cttcttggacatgatgatggatttgtgagagacaaaaacatgaaagtcactgttgtatac
aattattttggacctaattgccaacaacgcatgcctagaattcgttatggatatgcacat
gttgcgaataatttgtacatgggatgggtccaatatgcaataggaggaaatatgcaacca
agcctcaaaagccaagcaaacctctttatagcgccaaccacagggaataaggaggtgaca
tggagaaaaagtagtaacggaattggagacatgtgggaattttattcagttggggatgct
tttgaaaatggagcatctttcatggaaacaaaaggtggacaagtgaaaaaactgaattat
agccctgtacaaaattttaaagttgttgatgccaaatttgtgagatcattgacaagatca
tctggtgtattacaatgcagtaaaacctcaatatgttga
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