Trifolium pratense (red clover): 123881998
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Entry
123881998 CDS
T08949
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH6-like
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
tpra
Trifolium pratense (red clover)
Pathway
tpra03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tpra00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
123881998
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tpra03019
]
123881998
03012 Translation factors [BR:
tpra03012
]
123881998
Enzymes [BR:
tpra01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
123881998
Messenger RNA biogenesis [BR:
tpra03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
123881998
Translation factors [BR:
tpra03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
123881998
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
R3H
HA2_C
OB_NTP_bind
HA2_N
Ank_2
nSTAND3
Ank_5
AAA_19
AAA_22
ResIII
ATPase
T2SSE
Rad17
AAA_23
AAA_7
Motif
Other DBs
NCBI-GeneID:
123881998
NCBI-ProteinID:
XP_045786724
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All DBs
Position
LG4:complement(39475886..39484571)
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AA seq
1268 aa
AA seq
DB search
MPSKKNNKRQPLPKIAEATRIRLTRALEKFQASNDDEYKFEPGLSNVDRRYVHVLSLKMG
FKSKSSGTGNERRLSVRKVTKKSQSDNKLESLPHFTFSEESKRALGDLFAHFPPGDGNLK
DMVGENSGKTHNARRHTDDIFSSPSMTKDEIARRLEIVVSRRETVSGLKEITELRSKLPI
ASYKDEITSTVDSHQVVLISGETGCGKTTQVPQYILDHMWGKGEVCKILCTQPRRISAMS
VSERISKERGEPAGDNIGYKIRLDSKGGKQSSIVLCTTGVLLRVLVSKGSGPSKMKHVKD
GISNITHIIMDEIHERDRYSDFMLAILRDMLPSYPHLRLILMSATIDTARFSQYFGGCPI
IQVPGFTYPVKTYYLEDVLFAVKPSNNDTTTLSNPTNNHEISEDQKLSFDEAINLAWSND
EWDLLLELVSSEGTPELFNYQHSLSGLTPLMVFAGRGRVCEMCMLLSIGADCNLRAKDGT
TALEIAERENQAEAAEIIKKHMDGSNSTEEQNLLDKYLETVRSEIVDVVLIEKLIRKICT
DSKDGGILVFLPGWDDINRAREKLLASSFFMNPSKFVVISLHSMVPILEQRKVFTRPPPG
CRKIVLSTNIAETAVTIDDIVYVIDTGRMKEKSYDPYNNVSTLESSWISKASAKQREGRA
GRCQPGICYHLYSKLRAAALPDFRTPEIKRMPIEEICLQVKVLDPSCKIEEFLAKTLDPP
VSESIRNAIVVLRDIGALSPDGTLTDLGEKLGSLPVHPVISRMLFFAILMNCLDPALTLA
CASDYKDPFTIPMLTEDKKRAEDAKSELASLYGGFGDQFAVLAAYECWKNSKEMGLEARF
CSQYYVSGGAMKMLSGMRKQLQTELIRIGFIHSDDISSYSMNAYDPGVLHAVLVAGMYPM
IGRLCFPSKGAKRALIETASGDKVRVHNRSINFKLSFKKNLGHTLVVFDEITRGDMGVNI
RNCSLIGPLPILLLSTEISVAPGEENDQKKEEEDDDDDDEGSEDEAGGDDAMELDTKSSG
NNQDQFMSNPDSTVRIIVDRWLYFGSKAIDVSLLYCLRERLSAAILYKVSYPRSPLPPIL
AASMHAVACVLSCDGCSGRTVVADGVDKLTTMVNATNLGKPPTRPQPHTLTQPQPQPQPR
TSTQLQPQPTWTHPHIQHYGNGPKGSSAEFINHGGYQNFGPSSASTSMPKTFEIQAGSVP
NLSTISLDNGLMEVNDILLFLIMFSGNSELLVTRKHVTCVALSLYSANCDGDKLDSVYLF
SLYTEHKS
NT seq
3807 nt
NT seq
+upstream
nt +downstream
nt
atgccgagtaaaaagaacaataaaagacagccattacccaaaatcgctgaagctacgagg
attcgtttaacaagggctttggaaaagtttcaagcttccaatgatgatgagtacaagttt
gaacctggtttgtccaatgtcgaccgtcgctatgtgcatgtattatccctaaaaatgggg
tttaaatctaaaagttctgggactgggaatgaaaggagattgtctgttcgaaaagtcact
aagaagtctcagagtgataataagttagagagtcttccccatttcacattttcggaagag
tcaaaaagggcattaggcgatttatttgctcattttccacctggtgatggaaacttgaag
gatatggttggagaaaatagtggcaagactcataacgcaagacgtcatacagatgatatt
ttcagcagtccctctatgaccaaagatgaaattgctcggagattggaaatagtagtttct
agaagagagactgtatctggcttgaaagagatcactgagttgagatctaagctaccaatt
gcatcttacaaagatgaaattacatcaacagttgactcccaccaggtagttctcatttct
ggtgagactggttgcggaaagactacgcaggtcccacaatatattttggaccatatgtgg
ggtaagggcgaggtatgcaagatactttgcactcagcctcggcgtatctctgcaatgtca
gtttctgagagaatctctaaagagagaggagagcctgccggagataatattggatacaag
atacgcttagacagcaaaggtggaaagcaatcatctattgtgctatgtactactggagtt
ctattaagagtgttggtttctaaaggttctggtccgtcaaagatgaagcatgtgaaggac
ggaatttctaacatcactcacatcattatggacgaaattcatgaaagggacagatattca
gacttcatgttagcaatactcagagacatgctcccttcatatccgcatctacgtctgata
ttaatgagtgctaccattgatactgcaagattttctcaatattttgggggctgcccaatt
atccaagttccagggttcacttatccggtcaaaacttactatttggaggatgtacttttt
gctgtaaaaccaagcaataatgatactaccacacttagtaatccaacaaacaatcacgag
ataagtgaagaccaaaagctttctttcgacgaagctattaatttggcttggtctaatgat
gagtgggacctactgttagagttggtttcttccgaaggaaccccagaactatttaattac
cagcattctttaagtggccttacaccgttaatggtgtttgccggaagaggtagagtttgt
gaaatgtgcatgctcttatctattggggcagattgcaatttaagggccaaagacggaaca
actgcgctagagattgctgaaagggaaaaccaagcagaagctgctgaaataataaaaaaa
cacatggatggttccaactccacggaggagcaaaatttacttgataaatatcttgaaaca
gtccgatctgaaattgttgacgttgttctgatagagaagctgataagaaaaatatgtact
gattcaaaagatggaggcatccttgtttttcttccaggatgggatgatataaacagagcg
cgtgaaaaattgcttgcatcctcttttttcatgaatccatcgaaatttgtggtcatatct
ctgcattcaatggttccaattttggagcaaaggaaggtttttacgcgcccacctcctgga
tgccgcaaaattgttctctcaaccaatattgctgaaacagctgtcaccattgatgatata
gtgtatgtcatagacactggacggatgaaggaaaaaagttacgatccttataacaatgtg
tcaactcttgaatcatcttggatttcaaaagcaagtgccaagcaacgagagggacgtgct
ggccgttgtcaacctggaatttgttatcatttgtattcgaagcttcgagcagctgcgttg
ccagactttcggactccagaaattaagagaatgcctattgaggagatatgtctgcaggta
aaggtgcttgatccaagctgcaaaatagaagagtttcttgccaagacattagatccaccg
gtttctgaatccatacgtaatgctattgtagtccttcgtgatattggggcattgtcaccc
gatggaacacttactgatcttggagagaagcttggttctctccctgttcacccagtgatc
agcaggatgctgttttttgctatcttaatgaactgccttgacccagctttaactctagca
tgcgcatctgattataaagatccatttacaattccaatgttaaccgaagacaagaagaga
gccgaagacgccaaatctgagcttgcttcgttatatgggggatttggtgatcagtttgct
gtactagctgcatatgaatgttggaaaaattcaaaggaaatgggtctagaagcgcggttt
tgttcgcagtattatgtgtctggaggtgccatgaagatgttatctggcatgcgtaagcag
ctccaaacggaacttatccgaattgggtttattcattcagatgatatttcaagttacagc
atgaatgcgtatgaccctggtgtgctgcacgcggttttggttgctggtatgtatccaatg
attgggagattatgttttccaagtaaaggtgcaaaaagggctttgattgaaactgcaagt
ggcgataaagttcgcgtgcacaatcgttccataaattttaagttgtcattcaagaaaaat
ttaggccacactttagttgtgtttgatgagattactcgcggtgatatgggtgtaaacata
aggaactgcagtcttattggaccacttccaatcttgcttctttcaaccgagatttctgtt
gctccaggagaagagaatgatcagaagaaggaggaggaggatgacgacgatgatgatgaa
gggagtgaagatgaagctggaggtgatgatgcgatggagttggataccaaatccagtgga
aacaaccaggatcagttcatgtctaaccctgatagcacagttagaataatcgtggaccgt
tggctttattttggttcaaaagcaattgatgtttctctgttatattgcttgagagagcgt
ttatcagctgcaattttatacaaagtatcatatccaaggagtcctcttcctcccatccta
gcagcctctatgcatgctgtagcttgcgttctatcttgtgatgggtgttctggcaggaca
gtggtggccgatggcgtggacaaactgaccactatggtaaatgcaacaaatctagggaag
ccaccaacacggccacagccacatacattgacacagcctcagccgcagccacaaccacgt
acatcgacacagctccagccacagccaacatggacacatccccacatacaacattatggt
aatgggccaaaaggatcctctgcagagtttataaatcatggtggataccagaactttgga
ccttctagtgccagcacatctatgccaaagacatttgaaatccaagcaggatcagttcct
aacctctccaccatttcacttgataatggtttaatggaagttaatgatatattattattt
cttattatgtttagtggtaacagtgaacttctagttactagaaaacatgtaacatgcgtt
gcattgagcttatatagtgccaattgtgacggtgacaaattagacagtgtttatttattt
agtttatatacagaacacaaatcttaa
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