Trifolium pratense (red clover): 123882020
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Entry
123882020 CDS
T08949
Name
(RefSeq) putative tRNA pseudouridine synthase
KO
K06173
tRNA pseudouridine38-40 synthase [EC:
5.4.99.12
]
Organism
tpra
Trifolium pratense (red clover)
Brite
KEGG Orthology (KO) [BR:
tpra00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
tpra03016
]
123882020
Enzymes [BR:
tpra01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.12 tRNA pseudouridine38-40 synthase
123882020
Transfer RNA biogenesis [BR:
tpra03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
123882020
Prokaryotic type
123882020
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PseudoU_synth_1
Motif
Other DBs
NCBI-GeneID:
123882020
NCBI-ProteinID:
XP_045786755
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All DBs
Position
LG4:complement(32052091..32057084)
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AA seq
506 aa
AA seq
DB search
MAAAAAAASSLRLRLTFFPLLRKGPYTNTPPIIEKTRWQYFRCCSFSPSPSPQPSSSWQP
FRKKKVVMRIAYIGTNYRGLQMQRDQNLSTVEKELERAISKAGGILDSNLGDLEKIGWAR
SSRTDKGVHSLATMISFKMEIPENSWNGDPYGFSLANYINSYLPYDIKVISILPSQRSFD
PRKECSLRKYSYLLPAEIIGIQSHSSNEEIDYHLSEFNDILKEFEGGHPFHNYTSRSRYR
RHVPRRSSHSKRGEILPAYNSECEDSDEEENFKIDKAHTENTMLQKSSETFDSVEPVIDT
GNNKGSLHDQSSSPVVRAKWLYEPDEADRLNGSHFRRVLKCFCGKLERSVEHNYIELYIE
GESFMLHQIRKMVATAIAVKRKLLPRDIITLSLSKFSRIILPLAPSEVLILRGNSFSMRN
KPGNVTRSEMKTIVESEEINKVVDDFYTSVLLPQVSKFLDPSRVPWEDWIEKLDANTSIP
NDQLDEVRKARNLWKENSDGVISAHL
NT seq
1521 nt
NT seq
+upstream
nt +downstream
nt
atggctgctgctgctgctgctgcttcatctctgcgactgcgactaacattctttcctttg
ctcagaaaaggtccatacacaaacacaccacccatcattgagaaaacaagatggcaatat
ttccgttgctgctcattttccccttctccttctccccagccatcatcttcatggcaacca
tttcgcaagaaaaaggttgttatgcgtattgcttatataggcaccaattaccgaggtctc
caaatgcaacgtgatcaaaatttatcaactgttgagaaagaactagaacgtgcgatatcc
aaagctggtggcatccttgacagtaatttaggggatctagagaaaatcggatgggctaga
agcagccgaactgacaaaggagtacactctcttgcgacaatgatatcatttaaaatggaa
attccagaaaactcttggaatggagacccttatggcttttcccttgcaaattatattaac
tcttatcttccttatgatatcaaagttataagcattttgccttcacaaaggagctttgat
cctagaaaggaatgcagtttgcggaaatattcatacctactccctgctgaaattattggt
attcaaagccactctagcaatgaggaaattgattaccacttgtcggagttcaacgatatt
ctcaaagaatttgagggtgggcatcctttccataactatacatcgaggtccagatacaga
agacacgttcctcgtcgatcatcacattcaaagcgcggcgagattttaccagcctacaat
tcagaatgtgaggatagcgatgaggaggaaaattttaaaattgacaaggcacatacagaa
aacacaatgctccaaaagtcttcagaaacttttgattccgtggaacctgtcattgacacc
ggtaataacaaaggaagtttacatgatcaaagctctagtccggttgttcgtgcaaaatgg
ttatatgaacctgatgaagcagacagattaaatggttcccatttcagaagagttttaaag
tgtttttgtggaaagctagaaagatcagtggaacataattacatagagctctacatagag
ggagagtccttcatgttgcatcagataagaaaaatggtggcgactgccatagcagtaaag
cgcaaattacttccaagagatattataacactgtcactgtcaaagttctcacgaattatt
ctacccctcgcaccgtcagaagttctaatattaagaggaaacagcttctcaatgagaaat
aagccaggaaatgtaacaagatctgaaatgaagacaatagttgaatcagaagaaattaat
aaggttgttgatgatttttatacatcagttttgttacctcaagtttcaaagtttctggat
ccttcaagagttccctgggaggattggattgagaaattggatgctaacacaagcataccg
aatgatcagctggatgaggtcaggaaagctaggaacttgtggaaagaaaattctgatggt
gtaattagtgcacatctttga
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