Trifolium pratense (red clover): 123882066
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Entry
123882066 CDS
T08949
Name
(RefSeq) AMSH-like ubiquitin thioesterase 3
KO
K11866
STAM-binding protein [EC:
3.4.19.12
]
Organism
tpra
Trifolium pratense (red clover)
Pathway
tpra04144
Endocytosis
Brite
KEGG Orthology (KO) [BR:
tpra00001
]
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
123882066
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
tpra01002
]
123882066
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
tpra04131
]
123882066
04121 Ubiquitin system [BR:
tpra04121
]
123882066
Enzymes [BR:
tpra01000
]
3. Hydrolases
3.4 Acting on peptide bonds (peptidases)
3.4.19 Omega peptidases
3.4.19.12 ubiquitinyl hydrolase 1
123882066
Peptidases and inhibitors [BR:
tpra01002
]
Metallo peptidases
Family M67
123882066
Membrane trafficking [BR:
tpra04131
]
Endosome - Lysosome transport
Others
Others
123882066
Ubiquitin system [BR:
tpra04121
]
Deubiquitinating enzyme (DUB)
Ubiquitin-specific proteases (UBPs)
JAMM
123882066
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
JAB
USP8_dimer
Prok-JAB
Motif
Other DBs
NCBI-GeneID:
123882066
NCBI-ProteinID:
XP_045786810
LinkDB
All DBs
Position
LG4:20280806..20289816
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AA seq
509 aa
AA seq
DB search
MTIDLDSKTRRVDVDNRIPLRHYYRIADNLLKQASVYREENNIVDLYIILLRFISLVSET
IPYHRDYQASLPNERTAYKRRSLLVLDELESLKPEFKRRLDKLNESRVQAPLPEENGFNM
VMQSPANSSLEWPAVNKRYNSSMDFKHSAGLGSQSSSKPNNMLSTISTPIDKQFQKLSMN
LPLPNKETLSRHSFLGPNGLRGQWLGPSAEIKVQYPSSNDLTHAKDSSVVKYDLVGIKDG
DQGPVTSTMDSILSLDDGRWSHPMDESCSPVVTESREDYLQLLNIKQPLPPPVLAQVHPE
RASIPPSKVADPRPGPAKSSHDSGHGPTTYQHLHIPVKMMEDFLRLASANTRKNLETCGV
LAGSLKNRVFQITTLIIPKQESTSDSCETLDEGEIFDVQDRLSLFPLGWIHTHPSQTCFM
SSVDLHTHYSYQIMLPEAIAIVMAPTDTESPHGIFHLSDPGGVSVIRNCQQRGFHPHEEP
SDGSPIYEHCSHVYMNANMKFDVIDLRQK
NT seq
1530 nt
NT seq
+upstream
nt +downstream
nt
atgaccatcgacttagattcgaaaactcgcagagtcgatgttgataatcgcattcctctc
cgtcattactatcgaattgccgataatctcctcaagcaggcaagtgtctacagggaggag
aataatatagttgacctgtacatcatactccttagatttataagtttggtttctgagaca
ataccatatcaccgagattaccaagcttcacttcccaatgaaagaacagcatataagagg
agatcactactagtattggatgagcttgagtccttgaagcctgaatttaaacgtcggttg
gacaaattgaatgaatcacgtgtacaagctccattgcctgaagaaaatggtttcaatatg
gttatgcagagtccagcaaattcaagtttggaatggccagctgtcaataaaagatataac
tcaagcatggatttcaaacattctgctggattgggctcacaatcttcatcgaaacctaat
aacatgttatctacaatttccacgcctattgataagcagtttcagaaattatctatgaat
ctgccactaccaaataaggagaccttgtcaagacactcatttttaggaccaaatggtctt
cggggacaatggcttggacctagtgcagaaattaaggttcaatatccaagcagtaatgat
cttacgcatgccaaggattcaagcgttgtaaagtatgaccttgttggcattaaagatggt
gaccaagggccagttacatccacaatggattcaattctttccttggatgatggtagatgg
tcgcatcctatggatgagtcctgttctcctgttgtaactgaatcaagggaggactactta
cagttgctcaacatcaagcaacctttgcctcctcctgttcttgctcaggttcacccagaa
cgtgcctctattcctccttcaaaagttgcagatccaaggccaggaccggcgaaatcttct
catgattctggacatggtcccactacatatcaacacctacacattcctgtaaaaatgatg
gaagattttctgagattggcttcagcaaacacgcgaaagaacttagagacgtgtggtgtt
cttgcagggtctctgaaaaacagggtttttcagatcacaacacttataatcccaaagcag
gaatcgacttctgactcgtgtgaaacgttggatgaaggagaaatatttgacgttcaagac
cgcttgtcactttttcctctaggttggatacatacacacccgtctcagacgtgtttcatg
tcatctgtggatctgcatacgcattactcatatcagatcatgttaccggaggcaattgca
atagtcatggctcctaccgatacagaaagtccacatggcatatttcatctgtctgatcca
ggtggtgtttctgtaattcgtaattgtcaacaacgtggatttcatccccatgaagagcct
tcagatggaagtccaatatatgagcactgctctcatgtctatatgaatgccaacatgaag
ttcgatgtgattgaccttcgacagaaatga
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