Trifolium pratense (red clover): 123882151
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Entry
123882151 CDS
T08949
Name
(RefSeq) probable CCR4-associated factor 1 homolog 7
KO
K12581
CCR4-NOT transcription complex subunit 7/8
Organism
tpra
Trifolium pratense (red clover)
Pathway
tpra03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tpra00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
123882151
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tpra03019
]
123882151
Messenger RNA biogenesis [BR:
tpra03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
123882151
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
123882151
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CAF1
Motif
Other DBs
NCBI-GeneID:
123882151
NCBI-ProteinID:
XP_045786916
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Position
LG4:complement(60010380..60011834)
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AA seq
284 aa
AA seq
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MVNKIVMPLILPKSDSIQIREVWNDNLEEEFAILREIVDDYPYIAMDTEFPGIVLRPVGN
FKSSYDFHYQTLKDNVDMLKLIQLGLTFSDEHGNLPTCGDDDDERFCIWQFNFREFNVNE
DVFANDSIELLRQSGIDFKRNNENGIDARRFGELLMSSGIVLNDNVHWVTFHSGYDFGYL
LKLLTCQNLPDTQVGFFNLINMYFPTVYDIKHLMKFCNSLHGGLNKLAELLEVERVGICH
QAGSDSLLTSCTFRKLKENFFSGSLEKYAGVLYGLGVENGQSAY
NT seq
855 nt
NT seq
+upstream
nt +downstream
nt
atggtaaataaaattgtgatgccgctaattttgccgaaaagcgattccattcagattcgc
gaagtttggaacgataatcttgaagaagaattcgctatacttcgcgaaatcgtcgatgat
tatccttacattgctatggatacggaattccccggaattgttcttcgaccggttgggaat
ttcaagagtagttatgattttcattaccaaaccctaaaagacaatgttgatatgcttaag
ctgattcaattgggtctcacattctccgatgaacatggaaatcttccaacttgcggtgat
gatgatgatgagagattctgtatttggcaattcaattttagagaattcaatgtgaatgag
gatgtttttgcaaatgattcaattgaacttttgagacagagtgggattgatttcaagagg
aataacgaaaatggtatcgatgcacggcgtttcggtgagcttttaatgtcatctgggatt
gttttgaatgataatgttcattgggtaacttttcatagtggatatgattttggttatttg
ttaaagctattgacttgtcaaaatttgcctgatacacaagttgggttcttcaatttgatc
aatatgtatttcccaactgtgtatgatatcaaacatttaatgaagttttgtaatagtctt
catggagggttgaacaagcttgctgagttgttggaggttgagagagttgggatttgtcat
caagctggttcggatagtttgctcacatcttgtacattcaggaaattgaaagagaatttc
tttagtggatccttggagaagtatgcaggggtcttgtatgggttaggtgttgagaatgga
cagagtgcttattaa
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