Trifolium pratense (red clover): 123882448
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Entry
123882448 CDS
T08949
Name
(RefSeq) ubiquitin domain-containing protein DSK2a-like isoform X1
KO
K04523
ubiquilin
Organism
tpra
Trifolium pratense (red clover)
Pathway
tpra04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
tpra00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
123882448
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
tpra04131
]
123882448
03051 Proteasome [BR:
tpra03051
]
123882448
Membrane trafficking [BR:
tpra04131
]
Autophagy
Chaperone mediated autophagy (CMA)
Selective cargos
123882448
Proteasome [BR:
tpra03051
]
Eukaryotic proteasome
Proteasome interacting proteins (PIPs)
UBL-UBA shuttle proteins
123882448
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UBQLN1
ubiquitin
Rad60-SLD
UBA
STI1-HOP_DP
UBA_7
Ubiquitin_2
TBK1_ULD
Dsc3_N
Rad60-SLD_2
OTU1_UBXL
GerD
Motif
Other DBs
NCBI-GeneID:
123882448
NCBI-ProteinID:
XP_045787263
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Position
LG4:51013440..51018754
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AA seq
540 aa
AA seq
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MGGDGVVDDSTSETKTELEGVNINVRCSNGSKYSVRVSLDSTVGSFKDLIARNCDIPAQQ
QRLIYKGRILKDDQTLQSYGLEADHAVHLVRSFVPPNASGGTNSSGTNTTTNDAAGAGAR
ANDLGGLGGLGFGGASLFPGLGNNGAGGNGLFGEGFPDLEQMQQPFISNPNLMREMMNSP
AMQNLVSNPEIVRNLIMNNPQMQELMDRNPELAHILNDPSTLRQTLEATRNPEIMREMMR
NTDRAMSNIESSPEGFNMLRRMYENVQEPFLNATTMAGNTGISATRDQSTNPSTTSSETT
AGSPIPNANPLPNPWSSNTGTGVPQTNTRRSTTGGDARQQAPTGLGGLGLPGLEGMLGGS
GMPDPALLTQLMQNPAISQMMQSMLSNPQTLSQILGAANTEQRGMPDLNSLRDVMQNPEF
LRLFSSPETLQQLMSFQQALLSQQQSARESGQTGGGTGTGTGPFNNMGLEMLSSMFGGLG
AGSLAVPNRSNEPPEQLYATQLTQLQEMGFFDTQENLRALIATSGNVHAAVERLLGNSGQ
NT seq
1623 nt
NT seq
+upstream
nt +downstream
nt
atgggaggtgacggcgtcgttgatgattctacgtcggaaaccaagaccgaacttgaaggt
gttaacatcaacgtccgatgctctaacggttcaaagtattccgttcgtgtttctctcgat
tccaccgttggatccttcaaggatctcattgcgcgtaactgtgatatccctgcacaacaa
caacgccttatttacaagggtcgtatattgaaggacgatcaaactcttcaaagctatggt
ttggaggcagatcatgctgtgcatttggttcgtagctttgtacctcccaatgcgagtggt
gggaccaatagtagtggcaccaataccacaacaaatgatgccgcaggtgctggagctaga
gctaatgatcttgggggtttaggagggcttggttttggaggagcttcactgtttcctgga
cttggtaacaatggtgctggggggaatggcttatttggcgagggatttccagatcttgaa
caaatgcagcaaccatttatttcaaaccccaatttaatgagagaaatgatgaattcacct
gctatgcagaatctagtaagtaatcccgagatagtgcggaatcttataatgaacaaccca
cagatgcaagagctaatggatcgtaaccctgagctagcacatatacttaatgatccaagc
actctccgccagacccttgaagctacaaggaaccctgagatcatgcgtgaaatgatgaga
aatacagacagggcaatgagcaacattgaatcttctccagagggattcaacatgttgagg
cgcatgtatgaaaacgttcaagaaccatttttaaatgccactacaatggccggcaataca
ggaatttcagcaactcgggaccaatcaactaatccctcaaccactagttctgaaacgact
gctggttctcccatacccaatgctaacccacttcctaatccctggtcctctaatacagga
actggagttccccaaactaacaccagaagatcaaccactggtggggatgctagacagcaa
gcaccaactggcttaggaggtcttggtttgcctggacttgaaggcatgctgggtggcagt
ggtatgccagatcctgctttattgacccaattaatgcaaaatccagctatctcacaaatg
atgcaaagtatgctttccaacccgcaaactttgagtcagattcttggtgctgctaatact
gaacaacgtggcatgcctgatttaaattctcttagagatgtgatgcaaaatccagagttt
ctacgtttgttttcatcacctgagacattgcagcaactcatgtctttccaacaagccctt
ctgtctcagcagcaatcagcacgggaatcgggtcaaactggtggagggactggtacaggg
actggaccatttaacaacatggggttggagatgttatccagcatgtttggtggacttgga
gctggtagcctagctgttccaaatagatcaaatgagccaccggagcaattgtatgccacc
cagcttactcagcttcaagagatggggttctttgacacacaagagaacttaagggctctc
attgccacttcggggaatgttcatgcagcagttgaacgtcttttggggaactctggtcag
tag
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