Trifolium pratense (red clover): 123883662
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Entry
123883662 CDS
T08949
Name
(RefSeq) vacuolar protein sorting-associated protein 54, chloroplastic-like isoform X1
KO
K17600
vacuolar protein sorting-associated protein 54
Organism
tpra
Trifolium pratense (red clover)
Brite
KEGG Orthology (KO) [BR:
tpra00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
tpra01009
]
123883662
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
tpra04131
]
123883662
Protein phosphatases and associated proteins [BR:
tpra01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
123883662
Membrane trafficking [BR:
tpra04131
]
Endosome - Golgi transport
Tethering complex
GARP complex
123883662
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Vps54
Vps54_N
Syndetin_C
Motif
Other DBs
NCBI-GeneID:
123883662
NCBI-ProteinID:
XP_045788517
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All DBs
Position
LG5:17913812..17935182
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AA seq
1005 aa
AA seq
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MDSPPSQQTWGRSSSSSTLSTATHLNRTTSSPSSSSSPSFSKDSIQSLSSILNNPLSSTT
VYPPEFSPISSSIKATSEVTRSDFISYLTTVSDPFHRFDDIRKHATKEISGNDVDGSGAG
QALVACLREVPSLYFKEDFRLEEGATFRAACPFSTFNENAVLQEKLSQYLDVVELHLVKE
ISLRSSSFFEAQGQLQDLNGKIVEGCARIRQLKDTVRLIDSDLVESARQIQQLNGTRTNL
LALQQKLRLILYVNQALSALKLLVTSADCAGALDVTDDLQHLLDGDELTGLHCFRHLRDH
VTGFIESINSILSAEFIRASLHDAAESDAIILSKAKARASIPMNGKDEVKLEEEEETTNF
KDSLLPTVIGLLRTAKLPSILRIYRDTLTADMKSAIKTAVAELLPVLASRGSESEFFSGD
RAVEADGGGASLASKLRSLSSDCFVHLLSAIFMIVQAHLVRAAEVKKAIEWILSNCDGHY
ASDSVAAAIAHGAAAAEISQDSEVHGTMFLPYSPQRNVAKGPSFQGKVIDASSSSNMSKN
FRADVLRENAEAVFAACDAAHGRWAKLLGVRAVLHPRLKLQEFLTIYNITHEFITATEKI
GGRLGYSIRGTLQSQAKAFIDFQHDSRMSKIKAVLDQETWVEIDVPDEFQSIINMLFSSD
SLSSGNLNGVEEDNSISYHDMATNNDARPMADTGQSNAEQNVEQTDFTEESKKPNRGHSK
SLESISTEKDHKKSASQALFYKGVGYHMVNCGLILLKMLSEYIDMNNLLPTLSSEVVHRV
AEILKFFNTRTCQLVLGAGAMQVSGLKSITSKHLALASQVISFIHAIIPEIRQILFLKVP
ESRKLLLLSEIDRVAQDYKVHRDEIHTKLVQIMRERLLVHLRGLPQIVESWNRPEDADPQ
PSQFARSLTKEVGYLQRVLSRTLNEEDVQAIFRQVVVIFHSQISEAFSRFDISTSQAQNR
LYRDIKHILQCIRSLPSGDLNKSDTPNWGQLDEFLVQRFGNAAVQ
NT seq
3018 nt
NT seq
+upstream
nt +downstream
nt
atggattccccaccttcccaacaaacgtggggaagatcatcatcatcatcaaccctttcc
actgcaacacatctcaaccgtacaacttcatcaccttcctcatcttcttctccatctttc
tccaaagattcaattcaaagcctctcttccattctcaacaaccctctctcttcaaccacc
gtctaccctcccgaattttccccaatctcttcttcaatcaaagccacctccgaagtcacc
cgatccgatttcatctcttacctaacaaccgtctccgatccttttcaccgattcgatgac
atccgtaaacacgctaccaaagagatctccggtaacgacgtcgatggctccggtgccggt
caagcgcttgtagcttgtttacgtgaggttccgtcgctttactttaaagaggattttcga
ttggaagaaggtgctacgtttcgtgctgcgtgtcctttttctacgttcaatgagaacgct
gtgttgcaggagaagctttcgcagtatcttgatgtggttgagcttcatcttgttaaggag
atctcgctaaggtcttcgtcgtttttcgaagcgcagggacagttacaggatcttaatggt
aagatcgttgaaggatgtgcgaggattcgtcaattgaaggataccgttcggcttattgat
tccgatttggttgagtctgctaggcagattcagcagctcaatggcaccaggacgaatctg
ttggcgcttcagcagaaactcagacttattttatacgtcaatcaagcactctctgctctc
aaattgcttgttacatctgcagattgtgctggagcactggacgtaactgatgatttgcaa
catttactggatggagatgagcttactggcttgcattgctttcgtcatcttagagatcat
gtaacgggatttatagaatccataaacagcattctttcagcagagtttattcgagcatct
ttacacgatgctgcagaatcagatgcgataattttatctaaagctaaagcaagagcttcc
attcccatgaatggcaaagatgaagtaaagttggaagaagaagaagaaacaactaatttc
aaagatagtcttctccctacagtaattggcttgcttagaactgctaaacttccctctatt
ctgaggatctatcgagacacactgactgctgatatgaagagtgctattaaaactgctgtt
gccgagttgcttccagttcttgcttcccgaggttcagaatcagagttcttttctggagac
agagctgtagaggcagatggtggtggtgcttcacttgctagcaagttaaggagtctctcg
tctgattgctttgtccatcttttgagtgctattttcatgatagtacaggcacatttagtg
cgggctgctgaagtgaaaaaagccattgaatggattttgagcaactgtgatggtcattat
gcttctgattcagttgcagctgcaattgctcatggtgctgcagcggccgaaatatcccaa
gatagtgaggttcatggtactatgtttttgccatattcaccgcaaagaaatgttgccaag
ggtccctcttttcagggaaaagtaattgatgcttcaagctcctcaaacatgtcaaaaaat
ttcagagctgatgtattgcgagaaaacgcagaagctgtctttgcagcatgtgatgctgct
catggaagatgggcaaagcttctgggggtccgcgccgttctccatcctaggttgaaactg
caggagtttctaactatttacaacatcacccatgagttcattacagctacggaaaaaatt
ggtggaagattgggatacagcatccgtgggacactgcagtcacaggccaaggcttttatt
gatttccagcatgattctcggatgtcaaaaattaaggctgtgcttgaccaggaaacttgg
gtggagatagatgttcctgatgaatttcaatccattatcaatatgcttttttcatcggat
tcactgtcttctgggaaccttaatggtgttgaagaagataattcaatcagttaccatgat
atggcgacaaacaatgatgctcggccaatggcagacactggacagtcaaatgctgaacag
aatgtggagcagactgatttcacggaagaatctaagaaaccaaatagaggtcatagtaaa
tcgctagagagtatcagcaccgaaaaagatcataagaagtctgcatctcaggctcttttt
tacaaaggtgttggttatcacatggtaaactgtggcttgatattgctgaagatgttgtca
gaatatattgatatgaacaaccttttgccaacactatcgtcagaagttgttcaccgtgtg
gcagaaatcttgaagtttttcaacacaagaacatgtcaacttgtgctaggggctggtgca
atgcaggtgtctggtttgaagtccatcacctctaaacaccttgcgctggcaagtcaagtc
attagcttcatacatgctattattcccgaaattcggcagattctttttctgaaagtaccg
gagagtagaaaattgctattgctttcagagattgatcgagttgcgcaggattataaagtc
catagagatgaaatacatactaaattggttcagataatgcgagaaagattattagtacat
ttgcgtgggttgcctcaaattgttgagagttggaatagacctgaggatgctgatccccag
cccagtcaatttgctcggtcccttacaaaggaagttggatacctccagcgtgttctatct
cgaaccttgaatgaagaagatgttcaggcaattttcaggcaagtggtggttatcttccac
tcacaaatttcagaagcattttcaagatttgatataagcacttcacaagcacagaatagg
ttatatcgggacatcaaacatattctccaatgcatacggtcattgccatcgggtgattta
aataaatctgatacccctaactggggtcagctcgatgaattcttggtgcaaagatttggg
aatgctgctgttcagtaa
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