Trifolium pratense (red clover): 123883681
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Entry
123883681 CDS
T08949
Name
(RefSeq) regulator of nonsense transcripts UPF2 isoform X1
KO
K14327
regulator of nonsense transcripts 2
Organism
tpra
Trifolium pratense (red clover)
Pathway
tpra03013
Nucleocytoplasmic transport
tpra03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
tpra00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
123883681
03015 mRNA surveillance pathway
123883681
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tpra03019
]
123883681
Messenger RNA biogenesis [BR:
tpra03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
123883681
mRNA cycle factors
P-body specific factors
123883681
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MIF4G
Upf2
Motif
Other DBs
NCBI-GeneID:
123883681
NCBI-ProteinID:
XP_045788541
LinkDB
All DBs
Position
LG5:18485054..18498555
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AA seq
1193 aa
AA seq
DB search
MQDTVMDQHEEEGRNEGESNSKQDDEQEAVAHLEEIKKSIEAKMALRQSNLNPERPDAGF
FRTLDSSIKRNTAVIKKLKQINEEQRESLMDDLRSVNLSKFVSEAVAALCDAKLRSSDIH
AAVQICSLLHQRYKDFVPTLIQGLLKVFSPGKSSDESDSDRNLKAMKKRSSLKLLLELFF
VGVIEDGGIFINIIKDLTSMEQLKDREATQTSLTLLSSFARQGRIFLGLSVTGTEIHEEF
LKGLNITADQKKIIRKACYSFYEAAAELLQTEHSSLRLMEHENSKILNAKGELSDENLSS
YEKLRKSYDHLYRNVSSLAEALDMQPPVMPEDGHTTRVTSGEEAVSSAAGKDSVVEPIWD
DEDTRAFYECLPDLRAFVPAVLLGETEPKVNEQPVKGQDQPTEILPESDKSQLITLDSGE
VSTESSVLSEGESSERVNDKEEKEKSKELDRDNEKENEKKGEHDKEKLRSLEGTNLDALL
QRLPGCVSRDLIDQLTVEFCYLNSKSNRKKLVRALFSVPRTSLELLAYYSRMVATLSTCM
KDVASLLLQMLEEEFNFLINKKDQMNIETKIRNIRFIGELCKFKIAPAGLVFSCLKACLD
DFSHHNIDVACNLLETCGRFLYRSPETSIRMGNMLEILMRLKNVKNLDPRHSTLVENAYY
LCKPPERSARVAKVRPPLHQYIRKLLFSDLDKSTIEHVLRQLRKLPWSDCELYLLKCFMK
VHKGKYGQIHLIASLAAGLSRYHDEFAVAIVDEVLEEIRIGLELNDYGMQQRRIANMRFL
GELYNYKHADSSVIFETLYLIIIYSHGTPEQDVLDPPEDFFRIRLIITLLETCGHYFDHG
SSKKKLDRFLMHFQRYILSKGALPLDVEFDLQDLFADLRPSMVRYTSVDEVTAALVEIEE
HDRLVSADKASSEKHSHTDKPLSRTNSTTMVGNGQNNDNGAEENGVQDNVNDGEHDSGSD
VIDVEGHDDDELDEENHDDGCETEDDDDDGPASDDEDEVHVRQKVAEVDPLEEADFDQEL
KAVVQESMEQRRQELRGRPTLNMMIPMNVFEGSAKDHHAKGIGGESGDEALDEETGVNKE
VQVKVLVKRGNKQQTKQMYIPSDSSLVQSTKQKEAAELQEKEDIKRLILEYNDREEEELN
GLGAQPTNWMQSGGNKAGGRGNSFEGTSGRGGGSRHRHHHYYTGGGIYYSRRR
NT seq
3582 nt
NT seq
+upstream
nt +downstream
nt
atgcaagatacggttatggatcaacacgaggaggagggtcgtaatgaaggtgaaagtaat
agcaaacaagatgatgagcaggaagctgttgctcatctcgaagaaatcaagaaatcaatc
gaggcaaaaatggcgttacgtcaaagcaatttgaatcctgaaaggcctgacgcaggattt
tttaggaccttggattccagcattaagcgcaacactgcagttattaagaaactgaagcag
attaatgaagagcagcgtgaatcactgatggatgacttgcgaagtgtcaacttaagcaaa
tttgttagtgaagcagtggcagctctatgtgatgcaaagcttagaagttctgatatacat
gcagcagtacagatatgctctttgcttcatcaaaggtacaaggattttgtgccaactctg
attcaaggacttctcaaagtcttctctcctggaaaatctagtgatgaatcagattcagac
agaaacttaaaggcaatgaagaagcgcagctctctgaaacttctgttggaactttttttt
gttggggttattgaagatggtggcatttttatcaatatcataaaagatcttactagtatg
gaacagctgaaagatcgggaagctacacaaacaagtttgacccttctttctagctttgct
cgccaaggaagaatttttctaggactttctgttactgggacagaaattcatgaagagttt
ttgaaaggcctcaacatcacagcagatcaaaagaaaattatccggaaagcatgttattca
ttttatgaagctgcagctgaactacttcagaccgagcattcttcactacgattaatggag
catgagaattctaagattttgaatgcaaaaggcgagctaagcgatgaaaatctctcttca
tatgaaaaacttcgtaaatcctatgaccatttgtaccgtaatgtctcatcattagctgaa
gcacttgatatgcagcctcctgtaatgccggaggatggccacacaacaagggtaactagt
ggtgaggaggctgtttcttctgctgctgggaaagattctgttgttgaacccatatgggat
gatgaagacacaagggctttttatgaatgtttaccagatcttagagcttttgttcctgcc
gtgcttttgggagaaacggagccaaaagtcaatgagcaacctgtgaagggtcaagaccaa
ccaactgaaatattacctgaatcagacaaaagtcaactgataacccttgacagtggagag
gtctccacagagtctagtgttttatctgagggagaaagctcagagagagtgaatgataaa
gaagaaaaagaaaagtctaaagaattggacagagacaacgaaaaagaaaatgaaaaaaag
ggtgaacatgataaagaaaaactcagaagtcttgaaggaacaaatttggatgctctattg
cagaggcttccaggttgtgtgagccgggaccttatagatcaattaacagtagagttctgt
tatctaaattcaaaatcaaatcggaaaaagcttgtgagggctttgttcagtgtaccaagg
acttctctggaactgctagcatattactcacgtatggttgcaacactctcaacttgtatg
aaggatgtcgcctcccttctattgcagatgttggaggaggaattcaacttcttaataaat
aaaaaggaccagatgaatattgagacaaagatcaggaatatcaggttcattggagaactt
tgcaagttcaaaattgcccctgctggcctggtcttcagttgtttgaaggcctgtttagat
gattttagtcatcacaacattgatgtagcttgcaaccttcttgaaacatgtggccgtttt
ctgtatcggtctccagaaactagtatacgtatgggtaacatgttggagatactgatgcgc
ttgaaaaatgttaaaaacttggatcctagacacagtactttggtggagaatgcatactac
ctttgcaagccacctgaaagatctgcacgagtagccaaagtccgtcctccattgcatcag
tatatcagaaagttacttttctctgatcttgacaagtcgaccattgagcatgtactgagg
caacttcgtaaattaccatggagtgattgtgaactgtatcttttaaaatgctttatgaag
gttcacaaaggaaaatatggtcagatccacctgattgcatctcttgctgctgggttaagt
cgctatcatgatgaatttgctgtagctatagttgatgaggttttggaggagattagaatt
gggctggaactaaatgactatgggatgcaacaaagacgcattgccaacatgcggttttta
ggggagctttacaactacaagcatgctgactcatctgttatttttgagacactgtatctc
attattatctatagccatggaacaccagagcaagatgtactcgatccacctgaagatttt
ttccgtataaggttgatcattactctacttgaaacttgtggccattactttgatcatggc
tcttcgaagaaaaagcttgatcggttcctgatgcatttccaaaggtatattttaagcaaa
ggtgcactgcctctggatgtcgaatttgacttgcaggatctgtttgctgacttgcgtccc
agtatggttcgttacacttctgttgatgaggtgactgcagctctagtggaaattgaggaa
catgaccgattagtttctgctgacaaggctagtagtgaaaaacattcccatactgataag
cccttaagtaggaccaattccacgacgatggttggcaatggacagaacaatgataatggt
gctgaggaaaatggagtgcaagacaatgtcaacgacggtgagcatgattcagggagtgac
gtaattgatgtggaaggacacgatgatgacgagttggatgaggagaatcatgatgatggg
tgtgagactgaggatgacgatgacgatggacctgcttctgatgatgaggatgaagtccat
gtgagacagaaggtggcagaagtcgacccattggaagaagccgattttgatcaggagctc
aaggctgtcgtacaggagagtatggaacaacggcgacaggagctacggggtcgtcctaca
ttgaatatgatgattcctatgaatgtatttgaaggatctgccaaggatcatcatgcgaaa
ggaattggtggggaaagtggtgatgaagccttagatgaggaaactggtgtaaataaagag
gttcaggtgaaagttctggtgaagcgtgggaacaagcaacaaacaaaacagatgtacatc
cccagtgattcctcactggtgcagagtacgaaacagaaagaagcagctgagcttcaggag
aaagaagacattaagaggcttatcttggagtacaatgatagagaagaggaagagcttaat
ggattaggggcccaaccaacaaactggatgcaaagtggaggtaataaggctggtggtcgt
ggcaactcttttgaaggaaccagtggcaggggtggtggatcacggcatcgtcatcatcac
tactatactggcggtgggatctactatagtagaaggaggtaa
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integrated database retrieval system
