Trifolium pratense (red clover): 123883935
Help
Entry
123883935 CDS
T08949
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit A
KO
K07466
replication factor A1
Organism
tpra
Trifolium pratense (red clover)
Pathway
tpra03030
DNA replication
tpra03420
Nucleotide excision repair
tpra03430
Mismatch repair
tpra03440
Homologous recombination
tpra03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
tpra00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
123883935
03420 Nucleotide excision repair
123883935
03430 Mismatch repair
123883935
03440 Homologous recombination
123883935
03460 Fanconi anemia pathway
123883935
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
tpra03000
]
123883935
03032 DNA replication proteins [BR:
tpra03032
]
123883935
03400 DNA repair and recombination proteins [BR:
tpra03400
]
123883935
Transcription factors [BR:
tpra03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
123883935
DNA replication proteins [BR:
tpra03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
123883935
DNA repair and recombination proteins [BR:
tpra03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
123883935
MMR (mismatch excision repair)
123883935
DSBR (double strand breaks repair)
HR (homologous recombination)
123883935
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Rep_fac-A_C
Rep-A_N
REPA_OB_2
tRNA_anti-codon
DUF223
zf-like
Motif
Other DBs
NCBI-GeneID:
123883935
NCBI-ProteinID:
XP_045788863
LinkDB
All DBs
Position
LG5:complement(14566166..14569555)
Genome browser
AA seq
628 aa
AA seq
DB search
MAVNLTANAIPAIINGDVDAKPLVQVLDIATIQSTKNSQTERYRLLLSDSVLSHHAMLAA
QLNEKVKTGRIKKGTIVQLLDYICTLFQNRKIIMVLNMESIIPDCEIIGNPKSFVDSELP
VQKELCDNTVQSSSSGNNNNLAAQNRGSNVQNFRPTVQPAYKPPPVYKGRGAVVKNEAPA
GVIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAV
VDRFYDAIEVGKVYLISKGNLKPAQKNFNHLKNDWEVMLDLNSTVELCPDEDGSIPRQQF
SFRPISDIENVENNAILDVIGVVTFVSPTVPILRKNGMETQRRILNLKDNSGRSVELTLW
GEFCNREGQKLQEMVDAGVFPILAVKAGKVNEFSGKSIGSISTTQLFINPDFPEAQSLRS
WFDQVGKDSASLSVSKDITHGGPKNEIRKTVSQIKDEGLGRSDKPDWITLRAAISFIKTD
TFCYTGCPLMIGDRQCNKKVIRSGDTKWQCDRCNQEFEECDYRYLLQAQILDNTGLTWVT
AFQEAGEEIMGYSAKDLYVLKYEQEDVEKFGNIIKSRLFNQFVFRLKIKEELYGDEQKVK
ITVVKADKVNYSAESRYMLDFISKLCRQ
NT seq
1887 nt
NT seq
+upstream
nt +downstream
nt
atggcggtgaatctcacggcgaacgctattccggcgataatcaacggcgacgttgacgca
aaaccgttggttcaagttctcgacattgcaacaatccaaagtaccaaaaactctcagaca
gagagataccgtcttcttctttccgactccgttttatctcaccacgccatgctcgctgct
caactcaacgagaaagtcaaaaccggccgtattaagaaaggaacaatcgttcagcttctc
gattatatatgcactctttttcagaatcgcaagattattatggttctcaacatggaatcc
ataatacctgattgtgagataattggtaatccaaagtcatttgtggattcagaattacct
gttcagaaagaattgtgtgataacactgtgcagagttcgtccagtggtaataataataac
ttggctgctcaaaatagaggtagtaatgtgcagaatttcaggccaaccgttcaacctgca
tacaaacctcctccagtttacaaaggccgcggtgcagttgtaaaaaacgaagcaccagca
ggtgtaataccaatagccgctttaaatccatatcaaggtaggtgggccatcaaggcaagg
gttactgctaaaggggatttgcgccgctataacaatgctcgtggagatggaaaagtcttc
tcgttcgatctccttgattctgatggaggtgaaatccgtgtaacatgttttaatgctgtt
gttgaccgcttctatgatgcaattgaggttggtaaagtttacttgatatctaaaggtaac
ttgaaacctgcacagaagaattttaaccatttgaagaatgattgggaagttatgctggat
ttaaattcaacggttgagctttgcccagatgaggatggttctatacctagacagcaattc
tccttcaggcctatcagtgacattgagaatgttgagaataatgcaatccttgatgttatt
ggggttgtgacatttgtgagtcctacagttcccatcttaaggaagaacggaatggaaaca
cagagaaggattttaaatctaaaggacaattctggcaggagtgttgagctaacactgtgg
ggtgaattctgcaacagggaaggacaaaagctgcaagagatggtagatgctggggttttc
cccattttagcagtaaaggcggggaaggttaatgaattcagtggaaagtctataggctct
atttctactactcagcttttcataaatccagatttccctgaggcacaaagcttaagaagc
tggtttgatcaagtcggaaaagattctgcttctctatccgtttctaaggacattactcat
ggaggtcccaagaatgagatacgcaaaactgtgtctcaaatcaaagatgaaggtctgggg
aggtcagacaaaccagactggataacattgagggcagccatatcattcattaagactgat
acattttgttacacgggttgccctctgatgattggagatcggcagtgcaataagaaagtg
ataaggtcaggagacacaaaatggcagtgtgatagatgcaaccaggagtttgaggaatgc
gactatcgataccttctccaagctcaaatcttggataatactggattaacttgggttact
gctttccaggaagcaggggaagagattatggggtactcggcaaaagatctgtatgtgtta
aagtatgaacaggaggatgttgagaagtttggaaatataatcaagagtagactcttcaac
caatttgtatttaggctgaaaatcaaagaggaattatatggcgatgagcagaaggtgaag
attacagtagttaaggcagataaggtgaattattctgcagagagtagatacatgcttgac
ttcatttccaagctctgtaggcagtaa
DBGET
integrated database retrieval system
