Trifolium pratense (red clover): 123883968
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Entry
123883968 CDS
T08949
Name
(RefSeq) sm-like protein LSM1B
KO
K12620
U6 snRNA-associated Sm-like protein LSm1
Organism
tpra
Trifolium pratense (red clover)
Pathway
tpra03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tpra00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
123883968
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tpra03019
]
123883968
Messenger RNA biogenesis [BR:
tpra03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
123883968
mRNA degradation factors
5'-3' decay
Lsm complex
123883968
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
Hfq
Motif
Other DBs
NCBI-GeneID:
123883968
NCBI-ProteinID:
XP_045788890
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All DBs
Position
LG5:20914160..20920812
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AA seq
128 aa
AA seq
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MSWASPDELLLSTSLATYLDKKLLVLLRDGRKLLGFLRSFDQFANVVLEGACERVIVGDL
YCDVPLGLYVIRGENVVLIGELDLGKEELPPHMTCVSEADIRKAQKAERDASDLKGTMRK
RMEFLDFD
NT seq
387 nt
NT seq
+upstream
nt +downstream
nt
atgtcttgggcttcccctgatgagcttttactctccacctctcttgctacataccttgac
aaaaaacttcttgtcttgttgcgagatggtcgaaaacttttaggtttcttacgctcgttt
gatcaatttgctaatgttgttctagaaggtgcatgtgaacgagtaattgttggagatctt
tactgtgatgtgcctttaggcctttatgtaattcgtggggaaaatgttgtcttaattgga
gagctggacttgggaaaggaggaacttccgccacatatgacatgtgtgtcagaggctgac
ataagaaaggcacaaaaagcagaacgtgatgctagtgatctaaagggcaccatgaggaaa
aggatggaattccttgattttgactaa
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