Trifolium pratense (red clover): 123884028
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Entry
123884028 CDS
T08949
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH3-like
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
tpra
Trifolium pratense (red clover)
Pathway
tpra03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tpra00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
123884028
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tpra03019
]
123884028
03012 Translation factors [BR:
tpra03012
]
123884028
Enzymes [BR:
tpra01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
123884028
Messenger RNA biogenesis [BR:
tpra03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
123884028
Translation factors [BR:
tpra03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
123884028
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
DEAD
dsrm
HA2_N
AAA_22
nSTAND3
AAA_19
ATPase
T2SSE
AAA_16
ABC_tran
AAA_23
Motif
Other DBs
NCBI-GeneID:
123884028
NCBI-ProteinID:
XP_045788981
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All DBs
Position
LG5:11721529..11738120
Genome browser
AA seq
1138 aa
AA seq
DB search
MHNPKSAASFLIARAKSLQLRHHNYRFLASTSRSLLFSSPRFFSGYYNIEQFSDDEYDCD
FENHQASSTVANVDEWKWKLSMLLRNEKDQEIVSRDKRDRRDYEQIANLAKRMGLYSEVF
GKVVVASKVPLPNYRPDLDDKRPQREVVIPLSLQRRVEGLVQEYLDRLQLNSEKTIDSLD
NVNSKNQVKDIDMDENANSFVDESVMEKVLQKRSLRMRNMQRSWQESPEGKKMLEFRKSL
PAFREKEGLLQAIARNQVIVISGETGCGKTTQLPQYILESEIESGRGAFCSIICTQPRRI
SAMAVSERVSAERGESLGETVGFKVRLEGMRGKNTHLLFCTSGILLRRLLSDRNLSGITH
VFVDEIHERGMNEDFLLIVLKDLLPRRRDLRLVLMSATLNAELFSNYFGGAPTFHIPGFT
YPVRAHFLEDVLEFTGYKLTSFNQVDDYGQDKLWKTQKQLAPRKRKNQITALVDDALSKS
SFENYSPKTRDSLSSWAPDCIGFNLIEAVLCHICRKERPGAVLVFMTGWEDISCLRDQLK
AHPLLGDPNRVLLQTCHGSMATSEQKLIFDKPPPNVRKIVIATNMAEASITINDIVFVID
CGKAKETTYDALNNTPCLLPSWISQASARQRRGRAGRVQPGECYHLYPKCVYEAFSEYQL
PELLRTPLNSLCLQIKSLQVESIGEFLSSALQAPEPRTVQNAIDFLTMIGALDEKENLTN
LGKFLSILPVDPKLGKMLIMGAIFRCFDPVLTIVAGLSVRDPFLLPQDKRELAGTAKSRF
SAKDYSDHMALVRAYEGWKDAEREGSAYEYCWRNFLSAQTLQAIHSLRKQFSFILKEAGL
VDTDSSINNKLSHNQSLVRAVICSGLFPGIASVVHRETSMSFKTMDDGQVLLYANSVNSR
YQTIPYPWLVFGEKVKVNAVFIRDSTGVSDSILILFGGALSNGIQAGHLKMLDGYVDFFL
DPNLADCYLKLKDELDKLIQKKLEDPGIDIHKEGKYLMLAVQELVSGDQCEGRFVFGRDS
RKPKASNDENKFTKDGTNPKSLLQTLLMRAGHTPPKYKTRHLKTNEFRALVEFKGMQFVG
KPKRNKQLAERDAAIEALAWLTHTSDNTQHEDDKSPPDVTDNMLKLLGKRRKSKRHFD
NT seq
3417 nt
NT seq
+upstream
nt +downstream
nt
atgcataatcctaaatccgcagcgtctttcctcatagcacgtgccaagtctcttcaactt
cgccaccataactatcgctttctcgcttcaacttcacgctcactcttattctcctcgcct
cgcttcttttctggatattacaatatcgaacagttctctgatgatgaatatgattgtgat
tttgagaatcaccaggcatcgtctacggtcgccaatgtggatgagtggaaatggaaactc
agtatgttgttacggaacgaaaaggatcaagagattgtatcaagagacaaaagagatagg
agagactatgaacaaatcgctaaccttgccaaaagaatgggactttacagtgaggtgttt
ggaaaagtagttgttgcaagcaaggtgcctcttcctaactaccgaccagatttggatgac
aaacgtccacaaagagaggtggtgattccacttagtttgcaacggagggtggaaggtttg
gtgcaggagtatcttgatagactacaactaaattccgaaaagacaattgactctctggat
aatgtgaattccaaaaatcaggttaaagatatagacatggatgaaaatgccaattctttt
gtggatgaatctgttatggaaaaggtgctccagaagaggagtttgaggatgcgtaatatg
caaagatcttggcaggaatcacctgaaggcaagaagatgctggaattccggaagtctcta
ccagcatttagggagaaggaaggtttacttcaagctatagcacgtaatcaggttatagtt
atatccggagagactggatgtggtaaaactactcaacttcctcagtatatattagagtca
gagatagagtccggccgcggggcattttgcagtattatttgcacacagcctcgaaggata
tctgctatggcagtgtctgagagagtgtcagcagagagaggagagtctctgggtgaaaca
gttggtttcaaagttcggttagaaggaatgagagggaaaaatacccatctgctattttgt
actagtggtatattactccgaaggttgctgagtgatcgaaacctgagtggtataacccat
gtgtttgtggatgaaattcacgagcgaggcatgaatgaagacttcttactgattgtgttg
aaggatcttcttccacgtcgtcgtgatttaagattggtattgatgagtgccactttgaat
gctgaacttttttcaaattattttggaggtgcaccgacatttcatatcccgggtttcacc
tatcctgtaagagctcactttttagaagatgttttggaatttactggatataagttgaca
tctttcaaccaagttgatgattatggtcaagataaattgtggaaaacacaaaagcagctt
gcaccacggaagaggaaaaaccagatcactgctcttgttgacgatgctctttctaaatca
agttttgagaactacagtcccaagacacgcgattcattatcttcatgggctcccgactgc
ataggatttaatctcattgaggctgttctctgccatatatgtcggaaggaacgaccaggt
gccgtcttagtatttatgactgggtgggaggatataagttgtttaagagatcaacttaaa
gcacaccctcttttaggagatccgaacagggttctgcttcaaacatgccatggttcaatg
gcaacttctgaacagaaactcatctttgataaaccacctccaaatgtaaggaaaatagta
attgctacaaatatggcagaggcaagtattacgatcaatgacatagtttttgtcatagac
tgtggaaaggcaaaagagactacttatgatgctttgaataacacaccatgtctactacct
tcttggatatcacaagcatctgcacggcagagaagaggcagagctggtcgtgtgcagcca
ggagaatgctaccacctttaccctaaatgtgtttatgaagccttttctgaatatcaactt
ccggaacttttgagaacacccttgaactctctttgcttgcaaataaaaagtttgcaggtt
gagagcattggagaattcctatcatcagctttgcaggcaccagagccacgtaccgtccaa
aatgctattgattttctaacgatgattggagcattagatgaaaaagaaaatcttaccaat
cttgggaaatttctctcgatacttcctgttgatcccaagctgggaaaaatgctgataatg
ggagctatatttcggtgctttgatcctgttcttacaatagttgctggccttagtgtcagg
gatcctttccttttgccccaagacaagagagaattagcagggactgcaaagtctagattt
tctgctaaagattacagtgatcatatggctcttgttcgagcatatgaaggatggaaagat
gctgaaagagaaggatcagcttatgaatactgctggagaaattttctttctgcccaaact
cttcaggcaattcattcacttcgaaaacagttcagcttcatcttgaaagaagctggcttg
gtagatacagattcaagcattaataacaaattgagccataatcaatctcttgtccgtgca
gtcatatgttctggactctttcctggcatagcatcggtggtgcatagggagacatccatg
tcatttaagacaatggacgatggccaggttttattatatgcaaattcagtgaactcacgt
taccagactattccttacccatggttggttttcggtgagaaagtaaaggtaaatgctgtt
ttcatccgtgattccacaggtgtatctgattcaatacttatcctatttggtggcgctcta
agtaatggaatacaggcagggcatctgaaaatgttagatgggtacgttgacttctttttg
gatcctaatttagctgactgctatttgaagcttaaggatgaactagataagcttatccaa
aagaagctagaagatcctggcattgacattcacaaggaagggaagtacttgatgcttgct
gttcaagagttggtctcaggggatcagtgtgaaggaagatttgtatttggtcgtgacagc
cggaagcctaaggcctctaacgacgagaataaattcacaaaagatgggacaaaccccaaa
agcttgctgcaaacacttttgatgcgagcagggcacaccccaccaaaatacaaaacaaga
catctcaagacaaatgagttcagggcattggtagagtttaaaggaatgcaatttgttggc
aaacctaaaagaaataagcagcttgcagaaagggatgctgccatagaggcactggcttgg
ttaactcacacctcagacaatactcaacatgaagatgataaatctcctcctgatgttact
gacaacatgttaaaactcctagggaagcgtagaaaatcaaaacgacattttgattga
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