KEGG   Trifolium pratense (red clover): 123884049
Entry
123884049         CDS       T08949                                 
Name
(RefSeq) polyubiquitin isoform X1
  KO
K03873  elongin-B
Organism
tpra  Trifolium pratense (red clover)
Pathway
tpra04120  Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:tpra00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    123884049
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:tpra04121]
    123884049
   03400 DNA repair and recombination proteins [BR:tpra03400]
    123884049
Ubiquitin system [BR:tpra04121]
 Ubiquitin ligases (E3)
  Multi subunit type E3
   Cul2 complex
    Adoptor protein
     123884049
   Cul5 complex
     123884049
DNA repair and recombination proteins [BR:tpra03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    Other NER factors
     123884049
SSDB
Motif
Pfam: ubiquitin Rad60-SLD UBL_UBAC1 FlaG DNA_pol3_delta Dsc3_N Ubiquitin_2 Chal_sti_synt_N
Other DBs
NCBI-GeneID: 123884049
NCBI-ProteinID: XP_045789000
LinkDB
Position
LG5:19713775..19718745
AA seq 103 aa
MDMYIRIKRDKTTYFIRCKPSDKILDIKEKLQELIDQPVNDQRLILPGTGEVLEDAKTLA
DQKIETDAVVALTLRKDDNEFEEVNIVRPNDFYQTRDAEGGNW
NT seq 312 nt   +upstreamnt  +downstreamnt
atggatatgtacattcgcattaagcgtgataagacaacatatttcatccggtgtaagcca
tctgacaaaattcttgacataaaggagaaattacaagaactaatcgatcaacctgttaat
gaccaacggttaattctacctggtactggcgaagtattagaggacgctaagactctggct
gatcaaaagattgaaactgatgctgttgttgcactgaccttgaggaaagatgataatgag
tttgaggaagtcaacattgttcgaccaaatgatttctatcagacaagggatgcagagggt
ggcaattggtaa

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