Trifolium pratense (red clover): 123884220
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Entry
123884220 CDS
T08949
Name
(RefSeq) transducin beta-like protein 3 isoform X1
KO
K14555
U3 small nucleolar RNA-associated protein 13
Organism
tpra
Trifolium pratense (red clover)
Pathway
tpra03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
tpra00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
123884220
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
tpra03009
]
123884220
Ribosome biogenesis [BR:
tpra03009
]
Eukaryotic type
90S particles
U3 small nucleolar RNA-associated proteins
123884220
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_WDR3_1st
Beta-prop_WDR5
Beta-prop_THOC3
WD40_Prp19
WD40
Beta-prop_WDR3_2nd
WD40_CDC20-Fz
WD40_WDHD1_1st
EIF3I
Beta-prop_TEP1_2nd
Beta-prop_EML_2
WD40_Gbeta
Utp13
Beta-prop_EML
WD40_MABP1-WDR62_2nd
Beta-prop_WDR36-Utp21_2nd
WDR55
Beta-prop_CAF1B_HIR1
Beta-prop_WDR36-Utp21_1st
Beta-prop_WDR75_1st
Beta-prop_WDR90_POC16_2nd
Beta-prop_SCAP
WD40_MABP1-WDR62_1st
NBCH_WD40
Beta-prop_RIG_2nd
Beta-prop_DCAF4
Beta-prop_TEP1_C
Beta-prop_Aladin
WDR90_beta-prop_4th
Beta-prop_IFT122_1st
Beta-prop_EIPR1
Beta-prop_SPT8
ANAPC4_WD40
PEP5_VPS11_N
Beta-prop_Nup120_160
Beta-prop_WDR41
Beta-prop_WDR19_1st
Beta-prop_IFT140_1st
Beta-prop_DCAF12
Beta-prop_WDR75_2nd
Beta-prop_NWD2_C
Cytochrom_D1
WD40_like
Beta-prop_ACSF4
Beta-prop_RIG_1st
Nbas_N
Motif
Other DBs
NCBI-GeneID:
123884220
NCBI-ProteinID:
XP_045789236
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Position
LG5:complement(52277600..52286422)
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AA seq
917 aa
AA seq
DB search
MESLRLKTNYRCVPALQQFYTGGPYAVSSDGSFIVCACADSIKIVDSATASIKSTLEGDS
EQVTALVLSPDDKILFSSSHSRQIRVWDLSTLKCVRSWKGHEGPVMCMACDPSGGLLATG
GADRKVLVWDVDGGFCTHFFKGHGGVVSCVMFHPDPEKQLLFSGSDDGGDNATVRVWDIS
KTKRKNCIATLDNHRSAVTSIAVSEDGWTLLSAGRDKVVTLWDLHDYSNKKTVVTNEAVE
SVCAISAGSPFASSLDSHRQNSKKHAGSQALYFVTVGERGIVRIWSSEGAVCLFEQQASD
VTNSTDEDGSRRGFTSAVMLGTNQGLLCVTADQQFLFYSLNWTEELLQLSLTKRLVGYNE
EVVDMKFVGDDEKFLALATNLEQVRVYDLASMSCSYVLTGHTEIILCLDTCVSISGRNLI
VTGSKDNTVRLWESESTSCIGVGIGHMGAVGAVAFSKRNRDFFVSGSSDHTLKVWSMDGL
SDNGTAPINLKAKAVVAAHDKDINCVAVAPNDSLVCSGSQDRTACVWRLPDLVSVVVFKG
HKRGIWSVEFSPVDQCVVTASGDKTIRIWAISDGSCLKTFEGHTSSVLRALFITRGTQIV
SCGADGLVKLWTVKSNECVATYDHHEDKVWALAVGRKTEMLATGGSDAVVNLWLDSTATD
KEEAFRKEEEAVLKGQELENALSDADYTKAVQIAFELRRPHKLYELFAELCRKSGAEDHV
DRALKTFGNEELRLLFNYIREWNTKPKLCYVSQFVLFRVFNIFPPTDIVQIKGVGELLEG
LIPYSQRHFGRIDRLVRSTFLLDFILSGMSVIEPDTQQTVSKAEFPLRPEIDAPDQEMGS
RRKITLLKISLLRRKGNPTNLVLKMRLRRRIRLLKMIMILLQRKRNPRNQNMVPTRKSRM
LLTTKSNLYNYKHRSHV
NT seq
2754 nt
NT seq
+upstream
nt +downstream
nt
atggagtcccttcgcctgaaaaccaactaccgctgtgttccggctctgcaacagttctac
accggtggcccctacgccgtctcatcggacggttccttcatcgtctgtgcatgcgccgat
tcaatcaaaatcgtcgattccgccaccgcatccatcaagtccaccctcgaaggagactcc
gaacaagtcaccgccttagttcttagccccgacgataaaatcctcttctcttccagccac
agccgtcaaatcagagtttgggacttatctactctcaaatgcgtgcgctcttggaagggt
catgagggtcctgttatgtgtatggcatgtgatccttctggagggttgcttgctactggt
ggagctgataggaaggtccttgtttgggatgttgatggtggcttttgtacgcatttcttt
aaaggtcatggtggagttgtttcttgtgttatgtttcatcctgatcccgagaaacagctt
cttttttctggtagtgatgatgggggtgataatgcaaccgtaagggtttgggatatttcc
aagaccaagcgaaagaactgtattgcaacactagataatcatcgctctgcagtgacttcc
attgcagtatctgaagacggatggacattgctcagtgctggaagagataaggttgtaaca
ttgtgggatcttcatgattatagcaacaagaagactgtcgtcacaaatgaggcagttgaa
tctgtttgtgcaattagtgctgggagtccttttgcttcttctttggattcacatcggcaa
aattcaaaaaaacatgcaggttcccaagcattgtattttgttacagttggtgaacggggc
attgtgcgcatatggagttctgaaggtgcagtttgcttgttcgagcaacaagcttcagat
gtcacaaacagcacagatgaggatggttcgcgaaggggtttcacttctgctgttatgctt
ggcacaaatcaaggtttgctttgtgtgactgcagatcagcagtttctattttactctctg
aactggactgaagagttgttgcaattaagtcttaccaaaagactagtgggatataacgaa
gaggttgtagatatgaagtttgttggggatgatgaaaaattccttgctctagctacaaat
cttgaacaggttcgggtttatgaccttgcatctatgtcatgttcttatgtcttgactggt
catactgaaatcattctatgccttgacacctgtgtatcaatttctgggagaaacctaatt
gttaccggaagtaaagataacaccgttaggttgtgggaatcagaaagtacaagctgcatt
ggagtcggtataggtcacatgggagctgttggagccgttgcattttcaaaaagaaaccgt
gacttctttgttagtggcagcagcgatcatactcttaaggtgtggagtatggatggtctc
tcagacaatgggacagctccgattaatttaaaagcaaaagctgttgttgcagctcatgat
aaagatatcaattgtgtagctgttgctccaaatgatagtttagtatgtagtggttctcag
gatcgcactgcttgtgtttggaggcttccagatctagtatcagtagttgtatttaaaggg
cataaaagaggaatttggtctgtagaattttcccctgttgatcaatgtgtagtaacagca
tctggtgacaaaacaataaggatatgggctatatctgatggctcgtgtttgaagacattt
gaaggacacacttcaagtgtgttaagagcactgtttattactcgtggaacgcaaattgtt
tcttgtggtgctgacggtttagtaaaactatggactgtaaaatcaaatgaatgtgttgcc
acatatgaccatcatgaagacaaggtttgggccttggctgtaggcaggaaaacagaaatg
cttgcaactggtggcagtgatgctgttgtcaatctgtggctagattccacggcaactgat
aaagaagaagctttccgtaaagaggaagaggcagttttaaaaggtcaagagctagagaat
gctctatcagatgctgactataccaaggcagtccaaattgcatttgaactgcgcagaccc
cataaactttatgaattatttgcagaactttgcaggaagagtggagccgaagatcatgtt
gacagagcacttaagaccttcggcaatgaagagcttcgtttattatttaactacattcga
gaatggaatacaaaaccaaagctctgttatgtctcacagtttgtgctttttagagtgttc
aacatctttcctccaaccgatattgttcagattaaaggggttggtgaactccttgaaggt
cttataccatatagtcagaggcactttggtaggatagacagacttgtaagaagcacattt
ttgttagatttcattctatcaggaatgtcagttattgaaccagatacccaacagacggta
tcaaaggctgagtttccattgcggcccgaaattgatgctccagaccaagaaatgggatcg
aggagaaagatcacactattgaaaataagtctgcttcgaagaaaaggaaatccaacaaat
ctagtcttgaagatgagattgaggagaaggatcagactcttgaaaatgataatgatactg
cttcaaagaaaaagaaatccaagaaatcaaaacatggttcccacaagaaagtcaaggatg
ttgcttacaacaaagtcgaatctatacaattacaagcataggtctcatgtatag
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