Trifolium pratense (red clover): 123884312
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Entry
123884312 CDS
T08949
Name
(RefSeq) protein PAF1 homolog
KO
K15174
RNA polymerase II-associated factor 1
Organism
tpra
Trifolium pratense (red clover)
Brite
KEGG Orthology (KO) [BR:
tpra00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tpra03021
]
123884312
Transcription machinery [BR:
tpra03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
PAF1 complex
123884312
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Paf1
Motif
Other DBs
NCBI-GeneID:
123884312
NCBI-ProteinID:
XP_045789345
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All DBs
Position
LG5:complement(46576671..46582545)
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AA seq
664 aa
AA seq
DB search
MASYRPFPPPPASQNPIAPPPPPPQQRGNNNWGGYGYGGGVGVGGDSSTSSFPQIPPNSN
YQHHQHQHQHHHAPPPPPPSNYYPYPPPPPPPPDNSYQPPPPPPPGPMYYPPNNQYNHQQ
PPPPPPPLSPGASMQPPPPPPPVSPPPPPNNNEVERGVNKGSSGRRDVVPQHKQQHKPSH
GHPPRRVETEEEKRLRKKKEYEKQRQEEKHRQQQKKLKESQNSVLQKTQMVSSGGTGKVH
GSIAGSRMGERRTAPLLGGERVENRLKKPTTFLCKLRFRNELPDPTAQPKLMAFKKDKDQ
YAKYTITSLEKMYKPKLFVEPDLGIPLDLLDLSVYNPPSVRPPLAPEDEDLLRDDEAVTP
MKKDGIKRKERPTDKGVAWLVKTQYISPLSMESAKQSLTEKQAKELRDRKGGRSLLENLN
NRERQIREIEASFEAAKSQPVHATKKDLYPIEFMPLLPDFDRYDDQFVVAAFDNAPTVDS
EMYSKMDKSVRDVSESRAVMKSYVATSSDPANPEKFLAYMVPAPGELSKDIYDEDEEVSY
SWVREYHWDVRGDDAHDPTTFLVSFDESEARYLPLPTKLVLRKKRAKEGRSGDEVEQFPA
PARVTVRRRSTVAAIERKDSEVYTRLKGNSSKRLEMDDDLDDQHRAAEHHDNFQSSGGED
EMSD
NT seq
1995 nt
NT seq
+upstream
nt +downstream
nt
atggcctcttataggcctttccctcctccaccggcgagtcaaaaccctatcgcaccacca
ccacctccgccgcaacaacgggggaataataattggggtggttatggttacggtggcggt
gttggtgttggtggagattcttctacttcttcattccctcaaatacctccaaattcaaat
tatcaacatcatcagcaccagcatcagcatcatcatgctcctcctccaccaccaccttca
aattactatccatatccaccaccaccgcctccaccacctgataattcataccagccacca
cctccgccgccacctggtcctatgtattatccacctaataatcaatataatcatcaacaa
ccaccgcctccgccacctcctttatcgccgggtgcttcgatgcagcctccaccgccacct
cctccagtgtctccgcctcctcctccgaacaacaatgaagtggagaggggagtcaataaa
gggtcttctgggagacgtgatgtagttccgcagcataaacagcagcataagccttctcat
gggcatcctccaaggagggttgagacggaggaagagaagaggttgagaaagaagaaggag
tatgagaagcaaaggcaagaagaaaagcataggcagcaacagaagaagctgaaggaatca
cagaatagtgttttgcaaaagactcaaatggtgtcatctggggggactggaaaggtgcat
ggttctattgcagggtctcgaatgggagagaggagaactgcgcccttattgggcggtgag
agggttgaaaataggttgaaaaagcccaccacttttttgtgtaaactcagatttcgaaat
gaacttccggatccaactgctcaacctaagctaatggcgtttaagaaagataaagatcaa
tatgcaaaatatacaatcacatcactggagaaaatgtacaaacccaaactttttgtggag
ccagatctagggatacctctggacctgcttgatctcagtgtttacaatcctcccagtgtc
cgaccacctcttgctccagaagatgaagatttattgcgagatgatgaagctgttactcct
atgaaaaaagatggtattaaaagaaaagagaggcctactgataaaggtgtcgcttggctt
gttaaaacacaatatatatctcctttaagcatggaatcggccaaacagtcgttaactgaa
aaacaagctaaggagctgagagacaggaagggaggccgcagtctcttggaaaatcttaac
aatagggaaagacaaatcagggaaatagaagcatcatttgaagcagctaagtcccaacct
gttcatgcaactaaaaaagatttgtaccctattgagtttatgccattgttgcctgatttt
gataggtatgatgatcagtttgttgttgctgcatttgataatgctccaactgttgattca
gaaatgtacagtaagatggacaaatctgttcgtgatgtctctgaatcaagggcagttatg
aaaagttatgttgcaacaagctcagatcctgcaaatcctgagaaatttttggcatacatg
gtcccagcaccaggggagttgtcaaaggatatatatgatgaagatgaagaagtctcttat
tcttgggttcgcgagtatcattgggatgttcgaggtgacgatgcacatgatcccacaaca
ttcttagtttcgtttgatgagtcagaagctcgttatttgcctcttccaactaaactagtt
ttaagaaaaaagagggctaaagagggaagatcgggtgatgaggttgaacaatttccagct
cctgctagagtgactgtgaggagaagatcaaccgttgctgcaatcgagcggaaggattct
gaggtttatacacgtttaaagggaaattcgtccaagaggctagaaatggatgacgatctt
gacgaccaacatagagctgcagagcaccatgataatttccaatctagtggaggagaagat
gaaatgtccgattga
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