Trifolium pratense (red clover): 123884370
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Entry
123884370 CDS
T08949
Name
(RefSeq) probable polygalacturonase At3g15720
KO
K01184
polygalacturonase [EC:
3.2.1.15
]
Organism
tpra
Trifolium pratense (red clover)
Pathway
tpra00040
Pentose and glucuronate interconversions
tpra01100
Metabolic pathways
Module
tpra_M00081
Pectin degradation
Brite
KEGG Orthology (KO) [BR:
tpra00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
123884370
Enzymes [BR:
tpra01000
]
3. Hydrolases
3.2 Glycosylases
3.2.1 Glycosidases, i.e. enzymes that hydrolyse O- and S-glycosyl compounds
3.2.1.15 endo-polygalacturonase
123884370
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Motif
Pfam:
Glyco_hydro_28
Pect-lyase_RHGA_epim
Beta_helix
Motif
Other DBs
NCBI-GeneID:
123884370
NCBI-ProteinID:
XP_045789409
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Position
LG5:2243328..2246450
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AA seq
370 aa
AA seq
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MQSFIIFVLLLDFISPCLCTRLNIGTQNGIYNVMNYGAHGDGKSDDTQAFASTWSNVCNS
VGMSTLVIPAKKTFLVTKLHFSGRCKGKIHIQFEGKIVAPSREAWKAGESLISIENLNGL
TIDGNGQGGADGGGSTWWQCSGCQRPGVLHFHSCNDLSVSNIKITNSPRSHVSVNMCNGA
TFSHISIDSPPTSPNTDGFDISFSSNILVKDSNIKSGDDCIAINGGSSFINATGVTCGPG
HGISVGSLGKTRPNDQVSNVNVRNCTFIGTSNGGRIKTAPGGSGYAKHITFEKIILVNVK
NPIIIDQHYLQDMELDTDVSVSDVTYRGVYGTCDGNIAVNLDCSSKVSAICHNAYGTATN
TIPSVPCLLH
NT seq
1113 nt
NT seq
+upstream
nt +downstream
nt
atgcaatcgttcattatttttgtcctccttcttgattttatttctccttgtctatgtaca
agattgaatattggaacacaaaatggtatttataatgtaatgaattatggtgcacatggc
gatggaaaatctgatgatacacaagcatttgcaagtacatggagcaatgtgtgcaattca
gtagggatgtcaacactagttataccagcaaaaaaaacattcttggtgacaaagttacac
ttcagcggtcgttgcaaaggcaaaattcacattcagtttgaagggaaaatagttgcacca
tctagagaagcatggaaagctggggaaagtttgatttccatcgagaatttaaatggactc
acaattgacggcaatggccaaggaggagccgatggaggtggttcaacatggtggcaatgt
tctggttgtcaacgacctggggtcttgcattttcattcttgcaatgatcttagtgttagt
aacataaagatcactaatagcccaagaagtcatgtatcggttaatatgtgcaatggtgca
acattttctcatatatccatagattcccctcctactagccccaacactgatggctttgac
atttctttttctagtaatatcttagtaaaagattccaacataaaatctggtgatgattgt
attgccatcaatggtggctcctcttttatcaatgctactggggttacttgtggaccagga
catgggataagtgttggcagtcttggtaaaacaagacctaatgatcaagtttctaatgtt
aatgtacggaattgcaccttcatcgggacttcaaatggaggaagaataaagacagctccg
ggaggttcgggttatgcaaaacatattacatttgaaaaaatcattctagttaatgttaag
aacccaataattatagatcagcattatcttcaagatatggagctggatacagatgtttcg
gtaagtgatgtaacatatcgaggagtttatggaacttgtgatggcaacatagctgttaat
ttagattgtagctccaaggtttcagctatttgtcacaatgcctatggaactgctacaaac
accattccaagtgtcccttgcctacttcattaa
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