Trifolium pratense (red clover): 123884524
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Entry
123884524 CDS
T08949
Name
(RefSeq) SWI/SNF complex component SNF12 homolog isoform X1
KO
K11650
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D
Organism
tpra
Trifolium pratense (red clover)
Pathway
tpra03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
tpra00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
123884524
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tpra03021
]
123884524
03036 Chromosome and associated proteins [BR:
tpra03036
]
123884524
Transcription machinery [BR:
tpra03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
123884524
Chromosome and associated proteins [BR:
tpra03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
123884524
PBAF complex
123884524
GBAF(ncBAF) complex
123884524
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIB
Motif
Other DBs
NCBI-GeneID:
123884524
NCBI-ProteinID:
XP_045789594
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All DBs
Position
LG5:5324078..5327457
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AA seq
555 aa
AA seq
DB search
MSVNNNNTSKGIGASSSSFGNAGIPSPSMSTNPVFSQAQAQAQAQAQAQAQAQIAASFQG
QFPQSQAHAIVQAQSKAQAAHAQAAAVAHAQLQAHLQAQGLTLNQNQVGGLGNLGVSSSS
MSTPGSGSAKRGPLKPPMRPVGFLPQNNFSPLRPMELTPAARRKKQKLPEKQLQERVAAI
LPESALYTQLLEFESRVDAALSRKKVDIQEALKNPPCIQKTLRIYVFNTFANQIRTIPMK
PNAEPPTWTLKVVGRILEDGIDPDQPGVVQKSSPMYPKFSAFFKRVIISLDQRLYPDNHV
IVWENSRSPSPQEGFEVKRKGDKEFLVNIRLEMNYAPEKFKLSPALTEVLGIEVETRPRI
IAAIWHYVKARKLQNPNDPSFFHCDQALQKVFGEEKVKFTTVSQRISHHLFPPAPIVLEH
QIKLSGNSPAGSACYDVTVDVPFPIQRELSALLANVEKNKEIETCDEAICGIIRKIHEHR
RRRAFFLGFSQSPVEFINALIESQSRDLKAAAGEPSRSAEKERRADFFNQPWVEDAVIRY
LNRKPAAASDAPGST
NT seq
1668 nt
NT seq
+upstream
nt +downstream
nt
atgtctgtaaacaataataacacttctaaaggcattggtgcctcttcatcatcatttggt
aatgctggaataccttcaccttctatgtctacaaatcctgtgttttcacaagcccaggct
caagctcaagctcaagcccaagcccaagcccaagctcaaattgctgctagttttcaaggg
cagtttccacagtctcaagctcatgctattgtccaagcacaatctaaggctcaggcagct
catgcgcaagctgcggcagtagctcatgctcaactccaagctcatttgcaagctcaaggg
ttgactcttaaccagaatcaggttggtggtttagggaatttgggagtttcgtcgtcgtcg
atgtccacaccagggagtggtagtgcgaaacgtggtcctttgaaaccacctatgaggcct
gttgggtttttgcctcagaataatttctcaccgttgagaccaatggaactcacgcctgct
gcacggaggaagaagcagaagcttcctgagaaacagttgcaggaaagggtggctgctata
ctgccagaatctgctctttatacacagcttcttgagtttgagtctcgtgttgatgctgcg
ctttctagaaagaaggttgatattcaggaagcgctgaagaatccgccttgtattcagaaa
actcttcgtatctatgtatttaacacttttgcgaatcaaattcgcacgatacctatgaaa
ccaaatgctgagcctccgacgtggacactgaaggtagttgggaggatattggaagatggt
attgaccctgatcagccgggtgtagttcaaaagtcgtctccgatgtatccaaagttctcg
gcttttttcaaaagagtaatcatttctttggatcagaggctatatcccgataaccatgtt
attgtgtgggagaattctcgatcacccagtcctcaagagggttttgaagtgaagaggaaa
ggggataaagaatttctggtgaatatacgtctggaaatgaattatgcacctgagaagttt
aagctttcgccagcattgactgaagttcttggtattgaggttgaaacccgtccaagaatt
attgctgcgatatggcactatgtgaaggctaggaaactgcaaaaccctaatgacccttct
ttctttcactgcgatcaggctcttcagaaagtatttggggaagaaaaagtgaagtttaca
acggtttcgcaaagaatatcacaccatttgttccctccagcgcctatagttttggagcac
cagattaaactatcgggaaatagtccagctgggagtgcttgttatgatgtaacggtcgat
gttccttttcctattcagagggagttgtctgcattattggctaatgttgagaagaacaaa
gagatcgaaacatgtgatgaagcgatatgtggaatcattagaaaaatccatgagcaccgt
aggagacgggcattctttcttggtttcagtcaatctccagtagaatttattaatgccttg
attgaatctcaaagcagggatctgaaagctgcagctggagaacctagtcgcagtgctgaa
aaagagcgccgagcagattttttcaaccaaccatgggttgaagatgctgttattcgatat
ttgaatcgcaaaccagccgcagcaagtgatgctccaggaagcacatga
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integrated database retrieval system
