Trifolium pratense (red clover): 123884601
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Entry
123884601 CDS
T08949
Name
(RefSeq) probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH2
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
tpra
Trifolium pratense (red clover)
Pathway
tpra03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
tpra00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
123884601
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
tpra03041
]
123884601
03009 Ribosome biogenesis [BR:
tpra03009
]
123884601
Enzymes [BR:
tpra01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
123884601
Spliceosome [BR:
tpra03041
]
Complex A
U2 snRNP components
U2 related factors
123884601
Complex B
123884601
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
123884601
Ribosome biogenesis [BR:
tpra03009
]
Eukaryotic type
90S particles
Helicases
123884601
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HA2_C
OB_NTP_bind
HA2_N
DEAD
AAA_22
Helicase_C
AAA_19
nSTAND3
ResIII
SRP54
ABC_tran
T2SSE
AAA_7
Flavi_DEAD
FtsK_SpoIIIE
AAA_30
AAA_33
AAA_29
NACHT
Motif
Other DBs
NCBI-GeneID:
123884601
NCBI-ProteinID:
XP_045789692
LinkDB
All DBs
Position
LG5:21756486..21760456
Genome browser
AA seq
666 aa
AA seq
DB search
MGTERKRKVSLFDVVDDSAASKMVKTNGNSLVNHWNGKPYSQRYFDILDKRKTLPVWHQK
DDFLQVLKDNQTLILVGETGSGKTTQIPQFVLDAVDLETPDKRKKMMVACTQPRRVAAMS
VSRRVAEEMDVTIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIILD
EAHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLEAEKFQGYFFGAPLMKVPGRLHPVE
IFYTQEPERDYMEAAIRTVVQIHMCEPTGDILVFLTGEEEIEDACRRISKEVANLGDQVG
PVKAVPLYSTLPPAMQQKIFEPAPPPVKEGGPPGRKIVVSTNIAETSLTIDGGISNSIVY
VIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRTQPGKCFRLYTERSFNNDLQ
PQTYPEILRSNLANTVLTLKKLGIDDLVHFDFMDPPAPETLMRALEVLNYLGALDDEGNL
TKLGEIMSEFPLDPQMSKMLVVSPEFNCSNEILSISAMLSVPNCFIRPREAAKAADEAKA
RFAHIDGDHLTLLNVYHAYKQNNEDASWCYDNFINNRALKSADNVRQQLVRIMARFNLKL
CSTDFNSRDYYINIRKSMLAGYFMQVAHLERTGHYLTVKDNQVVNLHPSNCLDHKPEWVI
YNEYAL
NT seq
2001 nt
NT seq
+upstream
nt +downstream
nt
atgggtacagaaaggaaaagaaaagtgagtttattcgacgtcgttgacgactctgctgct
tctaagatggtgaaaaccaacggcaacagtctcgttaatcactggaatggtaaaccttac
tctcaaagatacttcgatattctagataagaggaaaacccttcccgtttggcaccagaaa
gatgattttttgcaagttttgaaggataatcaaactttgattcttgttggtgaaactggt
agtggtaaaaccactcagattcctcaatttgttttggacgctgttgatttagagaccccg
gataaacgcaagaagatgatggttgcatgcactcagcctcgtagagtagctgcaatgtct
gtttcacgccgtgtcgctgaagagatggatgtcactattggggaagaagttggttatagc
atccgttttgaggattgtagtagtgcaaggacagttttgaagtatctaactgatggtatg
cttttgagagaagcaatgacggatccacttttggagcgatacaaagtaattattcttgat
gaggcacacgaaaggactttggctactgatgtgctatttggtcttcttaaggaagttctt
aaaaacagacctgacttgaagttggtggttatgagtgcaacgcttgaagctgaaaagttt
caaggatatttctttggtgccccacttatgaaagttcctggaaggttacatccagtggaa
attttttatactcaggaaccagaaagggattacatggaggctgctattaggacagtggtg
cagattcacatgtgtgaacctactggagacatacttgtttttcttactggagaggaggag
atagaagatgcatgccgcagaatatcgaaagaagttgcaaatttgggtgaccaggtgggc
cctgtgaaagcagtaccattgtattctactcttcccccagcaatgcagcagaagattttt
gagccagctccacctccagttaaggagggaggcccccctggaaggaagattgtggtatca
acaaacatagcagaaacttcgttgacaattgatggcggaatatccaacagtattgtctat
gttattgaccctggatttgctaagcagaaggtttataaccctcgagttcgtgttgagtct
ttgttggtgtctccgatatcaaaggctagtgcacatcagagatctgggcgtgctggaaga
actcaaccggggaaatgctttagactttataccgaaagaagtttcaataatgatcttcag
cctcagacctatcctgaaattttgagatctaatcttgccaacacagttcttacattgaag
aaactgggtatagatgatttagtgcattttgacttcatggaccctcctgcccctgaaacc
ttaatgcgtgctttggaagtgttgaattacttgggtgcactggatgatgaaggtaactta
acaaagctgggtgaaattatgagcgagtttccgttggaccctcagatgtcaaagatgctt
gttgttagtcccgaattcaactgttcaaatgagattctttcaatttctgccatgctatca
gtacccaattgctttatccggcctagggaggcagcaaaagctgcggatgaagcgaaggct
aggtttgcacacattgatggagatcatctcacgctcttgaatgtataccacgcctacaag
caaaacaatgaggatgcttcttggtgctacgacaacttcattaataacagggcactcaaa
tcagctgataatgttcgacaacagcttgttcgtatcatggctcggtttaacttgaagtta
tgcagcacagacttcaatagtcgcgactactacatcaacataagaaagtcaatgctagca
ggatatttcatgcaggtggctcatcttgagcggacaggacactacttgacagtgaaagac
aaccaggtggtaaacttgcatccatcaaattgcctggatcacaagcccgagtgggttatc
tataatgaatacgccttataa
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