Trifolium pratense (red clover): 123884728
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Entry
123884728 CDS
T08949
Name
(RefSeq) protein transport protein SEC16B homolog
KO
K20353
COPII coat assembly protein SEC16
Organism
tpra
Trifolium pratense (red clover)
Brite
KEGG Orthology (KO) [BR:
tpra00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
tpra04131
]
123884728
Membrane trafficking [BR:
tpra04131
]
Endoplasmic reticulum (ER) - Golgi transport
Forward pathways
Coat protein complex II (COP-II)
123884728
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_Sec16
Sec16
Motif
Other DBs
NCBI-GeneID:
123884728
NCBI-ProteinID:
XP_045789857
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All DBs
Position
LG5:48540718..48549218
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AA seq
1404 aa
AA seq
DB search
MASNPPFHMEDQDDEDFFDKLVEDDVGPDKSGYDDQANDFDDVKAFSNLGVGVDASAFGN
SSVGGSGGEVKEKEKEKEKEDGGNGQDGVNSFGCDDFTYRGDHGMESGNSSGSSVSKNTG
IPSSDVKEKDWNAFNADSSGGGVGFGSYSDFFSEFGDQNGNGYHDDSNTEMKLGNEIPGD
QYGQGYHNSNTEMRHGNEILSDGLNASVDYAQYQDGQSYDASARSSICGEDLNSSQYWES
LYPGWKYDHNTGQWYQVDDHNATIAALGSSEVNTAMGWMAASDAKPEVSYMQQTAQSVAG
TLPESGITETVPSWNQGSQVNNGYPEHMIFDPQYPGWYYDTIAQEWGSLESYNSSVQSAF
QGLENGHVSTGTFLHNGNNLYRDYGQASYYESQSVGSQVANNNWIGSYGINQQQGLDTLA
TATATKSGNFATYGGNQQFDHSFGSSVSVNKDQQNASSSFGSVPFYNKVNNGHGLANGIV
ETQRFAPSGNFGQHFNYSNTQFDEQKNFSNDYVESKQPFGYSNQSFHGGQQHSYAPHVKR
SSAGRPPHALVTFGFGGKLVLMKDSSLSSSTYESQSVVQGSISVLNLMEVVSGSIDSSSI
GNGAGDYFRALGQQSVPGPLIGGSVGSKELNKWIDERIAHCRSSAVDYKKSERMRLLLSL
LKIACQYYGKLRSPFGTDAILKENDTPGSAVARLFASAKMNGKECGVLSHCLQNWPSEAQ
MRATASEVQNRLVSGKKKEALQYAQEGQMWGPALVVASQLGEKYYVDTVRQMALRQLVAG
SPLRTLCLLIAGQPAEVFSSDSSNSVDPSALNMPQHPAQFGSIGMLDDWEENLAVITANR
TKDDELVIIHLGDCLWKERSQIIAAHICYLIAEANFESYSDTARLCLLGADHWKFPRTYA
NPEAIQRTELYEYSKVLGNSQFILLPFQPYKLIYAYMLAEVGKVSDSLKYCQAVLKSLKT
GRAPEVETWKQMLSSLEERIRTHQQGGYAANLAPGKLVGKLLNFFDSTAHRVVGGLPPPA
PSSSSQGIVHGNEQNYQPGAHRVSNSQSTMAMSSLVSSDSMEPISEWTADNNKKTKPNRS
VSEPDFGRSPRQETSPDSQSKATGGTSRFSRFGFGSQLLQKITVGLVLKPRPGKQAKLGE
KNKFYYDENLKRWVEEGAEPPAEETALAPPPTTATFQNGLTDYNLKSALKTEGTLSKDKT
SNPELTPGFPPIPPSTGHFSARGRVGIRSRYVDTFNQGGGNSTNMFQSPSIPTAKPIVAA
NAKFFIPAPAPSLNEQTMEAIDENNHEDNLAYENPSTSYSNDWSFQSPKPPPPLARQRCP
SVGNFADHGAVVNGSNCNSPHSRRTVSWGGSPGCPFSPTKTREIMPLGEALGMPPSTYMS
DDVSLMRSPMGSGSFGEDLHEVDL
NT seq
4215 nt
NT seq
+upstream
nt +downstream
nt
atggcttcgaatcctccatttcatatggaggatcaggatgatgaggatttctttgataaa
cttgttgaggatgatgtaggacctgataagtctggttatgatgatcaagccaatgatttt
gatgatgtcaaagcattttcaaatctaggtgttggtgttgatgcttctgcatttggaaat
tcaagtgttggaggaagtggtggtgaggtgaaagagaaagagaaagagaaagagaaagag
gatggtggaaatggacaggatggtgttaattcatttggatgcgatgattttacatatcgt
ggtgatcatgggatggaatcggggaattcatcgggttcgagtgtgagcaagaacaccggc
attcctagttcggacgttaaggaaaaggattggaatgcatttaatgccgattcaagtggt
ggtggtgttgggtttggatcttattctgatttttttagtgaatttggggatcaaaatggg
aatggatatcatgatgattctaacactgagatgaaacttggtaatgaaattccgggagat
caatatgggcaaggctatcataattctaatactgagatgagacatggtaatgaaattttg
agtgatggcttgaatgcttcggttgattatgcgcaatatcaagacggtcaaagttatgat
gcatctgcgagaagtagtatttgtggggaagacttaaatagcagtcagtattgggagagt
ctttatcctggatggaagtatgatcataataccgggcaatggtatcaagtagatgaccat
aatgcaacaatcgctgctctgggaagctcggaagtcaatacagctatgggttggatggct
gcttctgatgctaaaccagaagtctcttatatgcagcaaactgcgcaatctgttgctgga
actttacctgaatctggcataactgaaactgtaccaagctggaatcaggggtcacaagtg
aataacggatatcctgaacacatgatttttgatcctcagtaccctggttggtattatgac
actattgcccaagaatggggctcgttagagtcttacaattcatctgttcaatctgctttt
cagggacttgaaaatggacatgtgtctactggtacatttttgcataatggtaacaatttg
tatagagattatggtcaagccagctattatgagtcacagagtgttggtagccaggttgca
aataacaattggatcggttcatatggtattaatcaacagcaaggtttggacacactcgca
actgccactgctactaaaagtgggaattttgcaacttatggtggaaaccagcaatttgat
cattcatttggttctagtgtttctgtcaataaagatcaacaaaatgcttctagctcattt
ggatcagttccattttacaataaagttaacaatggtcacggtttggctaatggaattgtt
gaaacgcaacgctttgcccctagtgggaactttggtcaacattttaattattcaaataca
cagttcgatgaacaaaaaaatttctcaaatgattatgttgaaagtaagcagccctttggt
tactccaatcaatcatttcatggtggacaacaacactcttatgcccctcatgttaaaaga
tcatcagctgggcgtcctcctcacgccttggtaacctttggatttggtggaaaactcgtg
ttaatgaaagattctagtctttcgagctcaacatatgaaagtcagagtgtcgtacaaggc
tctatttctgtgttaaacttgatggaagttgtctcaggaagtattgattcttccagtatt
ggaaatggcgctggtgattattttcgtgctctcggccagcaatcagtcccaggtccattg
attggtgggagtgttggaagtaaagagttgaacaaatggatagatgagaggattgcacac
tgcaggtcctctgccgtggattataagaaaagtgaaagaatgagacttcttctctctttg
cttaaaatagcttgtcaatattatggaaaactacgttctccttttggtacagacgccata
ctaaaagaaaatgatactcctgggtcagcagttgccagactctttgcttctgctaagatg
aatggtaaggagtgtggtgtactgagccattgcctgcaaaattggccttctgaagcacaa
atgcgggcaacggcttctgaggtacaaaatcgtcttgtctctggaaaaaagaaggaagct
ttgcaatatgcacaagaaggtcaaatgtggggacctgcacttgttgttgcttcacaactt
ggtgaaaagtactatgttgatacagtgaggcaaatggcacttcgtcaactggttgcaggg
tctcctctgcgcacactatgccttctaattgccgggcaaccagctgaagttttctcttct
gacagctcaaatagtgtcgaccctagtgctttaaatatgcctcagcatcctgcacagttt
ggatctattggcatgcttgatgattgggaggagaacttggctgtaataactgcgaataga
accaaagatgatgagcttgtaataattcaccttggtgattgcttgtggaaggaaagaagt
caaatcattgctgcacacatctgttatttaatcgctgaagcaaactttgagtcatactca
gacactgcaaggctttgtctattaggagctgatcactggaaatttcctcgaacttatgct
aatccagaggctatccagaggaccgagttgtacgaatattcgaaggtgcttggaaactct
cagtttattttgcttccgtttcagccatataagcttatatatgcatatatgctagccgaa
gtgggaaaggtttcagactcgttgaagtactgccaagcagtgctgaaatccttaaagact
ggccgtgcaccagaagttgaaacatggaaacaaatgttatcatctctcgaggagaggatt
cgaacccaccaacagggagggtatgcggcaaatttggctcctggcaaattagtgggcaaa
ttgctgaatttttttgatagtactgcacatcgagttgttggtggtttaccaccacctgct
ccatcatcatcctcacaaggaattgtccatggaaatgaacaaaattatcagcccggggca
catagagtgtctaacagccaatcaacaatggctatgtcttccttagtttcatctgattca
atggaacccatcagtgagtggacagctgacaataataaaaagacaaaacctaatagaagt
gtttcagagccagactttggtagaagcccccggcaggaaacctcacctgactcccaaagc
aaagcgacagggggcacatctcgcttttctcgttttggttttggctcacagcttttgcaa
aagatcacagtgggtctagtcttgaaacctcgccctggaaaacaggctaaattgggtgaa
aagaacaagttctattatgatgaaaacctgaaaagatgggtagaggaaggtgcagaacct
ccagctgaagaaactgcactggcaccacctccaacaactgcaactttccagaatggttta
actgattacaacttgaaatctgcattgaagacagaaggaacgctttctaaagataaaact
tcaaatcctgaacttactccagggttcccacctataccacctagcacaggtcatttctcc
gcccgtggccgcgttggtattcgatcaaggtatgttgacaccttcaaccaaggcggtgga
aattctacaaacatgtttcagtcaccatctattccaactgcgaaacctattgttgctgcc
aatgccaagttttttattcctgctcccgcgccatcattaaatgagcagacaatggaggct
atagatgaaaacaaccatgaagataatttagcttatgaaaatccttcaacatcatatagt
aatgattggtcattccaatcccccaaacccccaccaccattggccagacaaaggtgtccg
agtgtgggcaactttgcagaccatggagcagtggtgaatggcagtaactgtaattctcct
cactcacgacggacagtttcatggggtgggagtcctggttgtccatttagtcccacaaaa
acacgtgaaattatgcctctgggggaagctttgggaatgccgccatcaacatatatgtct
gacgatgtttctcttatgcgttcgcctatggggagtgggagttttggagaagatcttcat
gaggttgatctttga
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