Trifolium pratense (red clover): 123884933
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Entry
123884933 CDS
T08949
Name
(RefSeq) pre-mRNA-processing-splicing factor 8A-like
KO
K12856
pre-mRNA-processing factor 8
Organism
tpra
Trifolium pratense (red clover)
Pathway
tpra03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
tpra00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
123884933
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
tpra03041
]
123884933
Spliceosome [BR:
tpra03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
123884933
Complex C
U5 SnRNP specific factors
123884933
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Ortholog
Paralog
GFIT
Motif
Pfam:
PROCN
PRP8_domainIV
U6-snRNA_bdg
PRO8NT
U5_2-snRNA_bdg
PROCT
RRM_4
JAB
Motif
Other DBs
NCBI-GeneID:
123884933
NCBI-ProteinID:
XP_045790113
LinkDB
All DBs
Position
LG5:complement(55714407..55724670)
Genome browser
AA seq
2328 aa
AA seq
DB search
MSTVAGTTVPPPPPSPAVADSEARLEEKARKWQKMNSKRYSDNRKFGFVEPQKEDMPPEH
IRKIIKDHGDVSSKKFRHDKRVYLGALKFIPHAVYKLLENMPMPWEQVRDVNVLYHISGA
ITFVNETPMVIEPVYLAQWATMWIMMRREKRDRRNFKRMRFPPFDDEEPILDYADNLLDV
DPLEAIQLELDEEEDSAVCDWFYDHKPLVKTKFVNGSSYRNWCLSVPVMETLHRLGGQLL
SDLSDRNYFYLFEKESFFTAKALNVCIPGGPKFEPLYRDMEKGEEDWNEFNDINKLIIRS
PLRTEYRVAFPYLYNNRPRNVRLCVYHTPMVMYIKSEDPDLPAFYYDPLIHPISSANKRY
EKEIDDDDWVLPDGVEPFLKDVELYTDTTAAGISLLFAPRPFNMRSGRMRRAEDIPLVAE
WYKEHCPSSYPVKVRVSYQKLLKCFVLNELHHRPPKAQKKKHLLRSLQATKFFQTTKLDW
VEAGLQVCRQGYNMLNLLIQRKNLNYLHLDYNFNLKPVKTLTTKERKKSRFGNAFHLCRE
VLRLTKLVVDANVQFRLGNVDAFQLADGLQYIFSHVGQLTGMYRYKYRLMRQIRMSKDLK
HLIYYRFNTGPVGKGPGCGFWAPMWRVWLFFLRGIVPLLERWLGNLLARQFEGRHSKGVA
KTVTKQRVESHYDLELRAAVMHDVVDAMPEGIKQNKAKIILQHLSEAWRCWKANIPWKVP
DMPVPVEDMIHRYVKSKADWWTNVAHYNRERIRRGATVDKTVCRKNHGRLTRLWLKAEQE
RQHNYMKDGPYVTPEEAVAIYTTTVHWLESRKFSHIPFPPLSYKHDTKLLILALERLKES
YSVTARLNQLQREELGLIEQAYDNPHEALSRIKRHLLTQRSFKEVGIEFMDLYSYCVPVY
EIEPLEKITDAYLDQYLWYEGDKRHLFPNWIKPADLEPPPLLVYKWCQGINNLQGIWDTG
NGECVVMLQTKFEKFFEKIDLTILNRLLRLVLDHNIADYVTAKNNVVLSYKDMSHTNSYG
LIRGLQFASFVAQYYGLVLDLLFLGLTRASEIAGSPQMPNEFNTYWDTEVETKHPIRLYS
RYIDRVHILFRFTHEEARDLIQRYLTEHPDPNNENMVGYNNKKCWPRDARMRLMKHDVNL
GRSIFWDMKNRLPRSITTLEWENSFVSVYSKDNPNLLFSMCGFEVRILPKIRMIQEGFSN
TGDGVWNLQNEQTKEKTAVAFLRVEDEHIKMFENRVRQILMSSGSTTFTKVVNKWNTALI
GLMTYFREATVHTKELLDLLVKCENKIQTRIKIGLNSKMPSRFPPVIFYSPKEIGGLGML
SMGHILIPQSDLRHNQQTDVGVTHFRSGMTHEEDQLIPNLYRYIQPWESEFIDSQCVWAE
YALKRQEAQAQNRRLTLEDLEDSWDKGIPRINTLFQKDRHTLAYDKGWRVRADFKQYQVF
KQNPFWWTHQRHDGKLWNLNNYRTDVIQALGGVEGILEHTLFKGTYFPTWEGLFWEKASG
FEESMKYKKLTNAQRSGLNQIPNRRFTLWWSPTINRANVYVGFQVQLDLTGIFMHGKIPT
LKISLIQIFRAHLWQKIHESVVMDLCQVLDQELDALEIETVQKETIHPRKSYKMNSSCAD
ILLFAAHKWPMSKPSLVAESKDVFDQKASNKYWIDVQLRWGDYDSHDIERYTRAKFMDYT
TDNMSIYPSPTGVMIGIDLAYNLHSAFGNWFPGSKPLLQQAMNKIMKSNPALYVLRERIR
KGLQLYSSEPTEPYLSSQNYGEIFSNQITWFVDDTNVYRVTIHKTFEGNLTTKPINGVVF
IFNPRTGQLFLKVIHTSVWAGQKRLGQLAKWKTAEEVAALVRSLPVEEQPKQVIVTRKGM
LDPLEVHLLDFPNIVIKGSELQLPFQACLKIEKFGDLILKATEPQMVLFNIYDDWLKSIS
SYTAFSRLILILRALHLNNEKAKMLLKPDKTIVTEPHHIWPSLSDDQWIKVEVALRDLIL
SDYAKKNNVNTSALTQSEIRDIILGAEITPPSQQRQQIAEIEKQAREANQVTAVTTRTTN
VYGEELIVTTTSPYEQAAFGSKTDWRVRAISTTNLYLRVNHIYVNSEDIKETGYTYIMPK
NVLKKFICISDLRTQISGYLYGTSPPDNPQVKEIRCIVMPPQWGTHQQVHLPSALPEHDF
LNDLEPLGWMHTQPNELPQLSPQDLTSHAKVLENNKQWDGEKCIILTCSFTPGSCSLTAY
KLTPSGYEWGRVNKDTGSNPHGYLPTHYEKVQMLLSDRFLGFYMIPDTGLWNYNFMGVRH
ASGMKYGVKLGTPREYYHEDHRPTHFLEFSNMEEAKTMAEGDREDMFS
NT seq
6987 nt
NT seq
+upstream
nt +downstream
nt
atgtcaacggtggccggaactactgttcctccgccacctccgtctccagcggtggccgat
tcggaagcacggctcgaagaaaaggctagaaagtggcaaaagatgaactcgaagcgttac
agcgataatcgaaaattcggattcgttgaacctcagaaagaagatatgccacctgaacat
ataagaaaaatcatcaaagatcatggtgatgtttcttcaaagaaatttcgtcatgataag
cgtgtttatcttggtgctttgaaattcatacctcatgctgtatacaagctgctcgagaat
atgccaatgccatgggaacaagttcgtgatgtgaatgttttgtatcatatttctggtgct
attacatttgtgaatgaaacacctatggtgattgaacctgtttatcttgctcaatgggct
acaatgtggatcatgatgagaagagagaaaagggataggagaaatttcaagagaatgagg
tttccaccttttgatgatgaagagcctatacttgattatgctgataatcttttagatgtt
gatccgttggaagcgattcagctcgagcttgatgaagaggaggattctgctgtttgtgat
tggttttatgatcataagccacttgtgaaaacgaagtttgtgaatggttcgagttatcga
aattggtgtctttcggttccggttatggaaacattgcatcggcttggtgggcagcttttg
tctgatctgagtgataggaattatttctatttgtttgaaaaagagtccttttttactgct
aaggctttgaatgtttgtatacctggtgggccgaaattcgagcctttgtatcgtgacatg
gagaaaggagaggaagattggaatgagtttaatgatattaacaagcttattataaggtcg
ccgcttcggacagagtatagggttgcttttccttatctttataacaacaggcctcggaat
gtgaggctttgtgtttaccatactcctatggttatgtacataaaatctgaagatcctgac
ctacctgcattttattatgatcccttgatacacccaataagtagtgctaacaagcggtac
gagaaggaaatcgatgatgatgactgggtcttgccagatggtgtggaaccttttcttaaa
gatgttgagctttatactgacaccacggctgctggaatctcgttgctgtttgctcctcgt
ccttttaacatgaggtctggccgcatgaggcgtgccgaagatattcctcttgtggcagaa
tggtacaaggagcattgtccttcatcttatccggttaaagttcgcgttagttatcaaaag
ttgctcaagtgttttgtgttgaatgagctgcatcatagacctcctaaggctcaaaagaag
aagcacttattgagatcacttcaagcgacaaagtttttccagaccacaaaacttgactgg
gttgaagcaggtcttcaagtttgtcggcaggggtacaacatgttgaacctgttaatacaa
aggaaaaatttgaactaccttcaccttgattataattttaacttgaagcctgtcaaaacc
ttgaccacaaaagagcgtaaaaaatcacgatttggtaatgcttttcacctctgtcgtgag
gtccttcgtttgacgaaacttgtggtggatgccaatgttcagttccgtttaggtaatgtt
gatgctttccagctggcggatggcctccaatatattttctctcatgttggtcaattgacc
ggtatgtataggtacaagtataggcttatgcggcaaataagaatgtcgaaagacttgaag
cacttgatttactaccgttttaacacgggtcctgttggcaagggaccgggttgtgggttt
tgggcaccgatgtggagggtttggttattctttcttcgtggtattgttccccttcttgaa
cgatggcttgggaatttactggcaagacagtttgagggacgccactctaaaggagtggcg
aagaccgtcactaagcagcgtgttgagagccattatgacttagagcttcgggctgctgtt
atgcatgatgtggttgatgccatgcctgaaggtataaagcagaataaggcaaaaattata
ttgcagcatttgagtgaagcttggcgctgctggaaggcaaatattccttggaaggttcct
gatatgcctgttccggtagaggacatgatccatcggtatgtgaaatcaaaagcagattgg
tggacaaatgttgctcattataatcgtgagcgtataagaagaggtgcaactgttgataaa
actgtttgtcgcaagaatcatggaagattgacacgtctttggctgaaggcagagcaggag
cgccaacacaattatatgaaagatggtccatatgttactcctgaagaagctgttgctatc
tatacaactacagtccactggttggaatctaggaagttctcccatattccatttccacct
ctatcatacaagcatgatacaaagttgcttattcttgcacttgagagattgaaggaatcc
tacagcgttacagcaagattaaatcaactgcaaagagaagagctggggctgatcgaacaa
gcttatgacaatccacacgaggcattatcacgaattaagcgacacctcctcacccaacgt
tccttcaaagaagttggaatagagttcatggatttatatagctactgcgttccggtttac
gaaatagagccacttgagaaaattacagatgcatatcttgatcaatatctgtggtatgaa
ggcgacaagcgtcatctctttcccaactggatcaagccagcagatttagagccaccacct
cttttagtttacaaatggtgtcaaggtataaacaatttgcaaggtatttgggacaccggc
aatggtgagtgtgttgtaatgctgcagactaagttcgagaagtttttcgagaagattgat
ctgacaattttaaatcggcttcttcgtttagttttggaccacaacattgcagattatgtc
accgcaaaaaacaatgttgtgttgtcatataaggacatgagtcacacaaattcatatggt
ctaatacgtggattacaatttgcgtcatttgttgctcaatattatggcctagtactggat
cttttgtttcttggattgactcgagcaagcgagattgctggttcaccacagatgcctaac
gagttcaatacttattgggacacagaagttgagaccaagcatccaataaggttgtattct
cggtacatagaccgagtccacatattatttcgctttactcacgaggaggctcgggatctc
attcaacgatatctcaccgagcaccctgatcctaacaatgagaacatggtgggttacaat
aataagaagtgctggccaagagatgcaagaatgaggctcatgaagcatgacgtcaatctt
gggaggagtatcttttgggatatgaaaaatcgtcttcctcgaagtatcacaactttggaa
tgggaaaatagctttgtttctgtttacagcaaagataatccaaatttgctttttagcatg
tgtggatttgaagtgaggatacttccgaaaattagaatgattcaagaaggattcagcaac
acaggagacggtgtttggaatctccaaaatgaacagacaaaggaaaagaccgctgttgct
ttcttaagagttgaggatgaacatataaaaatgtttgagaatcgtgtgaggcagattctt
atgtcatcgggttctactacattcaccaaagttgtcaacaagtggaatactgctttgata
ggactcatgacatacttccgagaggcaactgtgcatactaaagagctcttggatttactt
gttaaatgtgaaaataaaattcaaactcgtatcaagattggacttaactcaaaaatgcca
agccggtttccgcctgtcattttctactcgcccaaggaaattggaggacttggaatgttg
tcgatgggtcacattttgattccacaaagtgatctacgacacaatcagcagacagatgtt
ggtgtaacccattttagaagcgggatgactcatgaggaggaccagttgattcccaatctt
tatcgctatatacagccttgggaaagtgagtttattgattcacagtgcgtctgggctgaa
tatgcattaaaaaggcaggaagcacaagcacaaaataggcgcttgacccttgaggactta
gaagactcatgggacaaaggaataccacgtattaacactttgttccagaaggatagacac
acgttggcttatgataaaggatggagggtgcgtgcagacttcaagcagtatcaagttttc
aaacaaaaccccttttggtggacacaccagaggcacgatgggaagttgtggaacttgaat
aattaccgaactgatgttattcaagcccttggaggagtggaaggaattcttgagcataca
ttattcaaaggaacatattttccaacttgggaaggtctcttttgggaaaaggcatcaggt
tttgaggaatctatgaagtataagaaactcaccaatgctcagagatctggtctcaatcag
ataccgaatcgtagatttactctttggtggtcaccaaccattaaccgagctaatgtttat
gttggtttccaagttcagctagatctgactggtattttcatgcacgggaaaattccaact
ttgaagatatctcttattcagatatttagagcacacttgtggcagaagatccatgagagt
gttgtcatggatctctgtcaggttttggatcaagagttggatgctttggagattgaaact
gtccagaaggaaacaatccatcccaggaagagttacaaaatgaacagttcttgtgcggac
atccttctctttgctgcccacaaatggccaatgtcaaagcctagtcttgtagctgaatct
aaggatgtttttgatcagaaggcaagcaataagtattggattgatgtccagcttcgatgg
ggtgattatgattctcacgatattgagcgttacactcgggccaaatttatggattacacg
acagataatatgtctatatacccatctcctactggggttatgattggcattgatttggca
tataacttgcattctgcatttggaaactggttccctggatcaaagccactacttcagcag
gccatgaataagattatgaagtcaaatcctgcattgtatgttttgagggaacgaatcagg
aaaggtctgcagttgtactcttctgagcccacggaaccatatttatcttcccaaaactat
ggagagatattcagcaaccaaatcacttggtttgttgatgacactaatgtgtatcgtgtt
acaattcataagacttttgaaggaaatcttacaacaaaacccatcaatggtgtcgttttt
attttcaatccaaggaccgggcagttgtttcttaaggttattcatacgagtgtatgggct
ggtcagaagcgtctcggtcaactggcgaagtggaaaacagcagaagaagttgcagctctt
gtaaggtctttgcctgtagaagaacagccaaagcaagttattgttactcgtaaaggaatg
ttggacccattggaggttcacttgctggatttccccaatattgttatcaaaggaagtgag
ctgcagcttcctttccaagcatgtttgaaaattgaaaaatttggggatcttattttgaag
gctacagaaccacaaatggttttgttcaacatttatgatgactggctgaagagcatttcc
tcatacactgcattctccaggctgattcttattctgcgtgcacttcatttgaataatgaa
aaggcaaagatgttactgaagcctgacaaaactatcgtcactgaacctcatcacatctgg
ccttcactaagtgatgaccagtggataaaggtggaggttgcattaagagatcttatactt
tctgattatgcaaagaaaaacaatgtgaatacttcagctttgactcagtctgagattcgt
gatattatacttggagctgagattaccccaccttcacaacagcggcaacagattgcagag
attgaaaaacaggcgcgtgaagcaaatcaggtgacagctgtaacgacaaggaccacaaat
gtttacggtgaagaactgatagtaaccaccactagtccctatgagcaagctgcttttggt
tcgaagactgattggcgtgtcagagcaatatcaaccacgaatttataccttcgagtaaac
catatatatgtgaattctgaggatataaaggaaacagggtatacctatatcatgccaaag
aacgttttgaaaaagtttatatgcatatctgatcttcgaacacagatttctgggtacttg
tatggtacaagtcctccggacaatcctcaggtcaaggaaatccggtgcattgtgatgcca
ccgcaatgggggactcatcaacaagtccatcttccatcagctctcccagaacatgatttc
ttgaatgatttggagcctttggggtggatgcatactcaaccaaatgaacttccccagttg
tcgcctcaggacctcacttcacatgctaaggtcctagagaacaataaacaatgggatggg
gagaaatgtattatcttgacttgcagttttactccaggttcctgttctttaactgcatat
aaactaactccatcgggttatgaatggggacgtgttaacaaggatacaggaagcaaccca
catggttaccttcccactcattatgagaaggttcagatgctcctcagtgatcgcttcctt
ggtttctacatgattccggatactggtctgtggaattacaacttcatgggagtgaggcac
gcatcagggatgaagtatggagtgaagcttgggacacctagagagtattaccacgaagat
catagaccaacccatttcttagagttcagcaatatggaggaagcgaagacaatggctgag
ggggatcgagaggatatgttctcttag
DBGET
integrated database retrieval system
