Trifolium pratense (red clover): 123885056
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Entry
123885056 CDS
T08949
Name
(RefSeq) probable polygalacturonase At3g15720 isoform X1
KO
K01184
polygalacturonase [EC:
3.2.1.15
]
Organism
tpra
Trifolium pratense (red clover)
Pathway
tpra00040
Pentose and glucuronate interconversions
tpra01100
Metabolic pathways
Module
tpra_M00081
Pectin degradation
Brite
KEGG Orthology (KO) [BR:
tpra00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
123885056
Enzymes [BR:
tpra01000
]
3. Hydrolases
3.2 Glycosylases
3.2.1 Glycosidases, i.e. enzymes that hydrolyse O- and S-glycosyl compounds
3.2.1.15 endo-polygalacturonase
123885056
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Motif
Pfam:
Glyco_hydro_28
Pect-lyase_RHGA_epim
NosD
Motif
Other DBs
NCBI-GeneID:
123885056
NCBI-ProteinID:
XP_045790233
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Position
LG5:6991729..6995250
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AA seq
397 aa
AA seq
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MKFQFVSFVMFVVVAAAAASPYTSPSFNVLDYGAVGNGKNDETRAFMDAWKDTCSEVHDN
PTLLIPKGKTFMLQPMWFQGPCNSATIYIKIEGTIIAPNNIKAWKWPNNIDRLTWIRFIE
ISGLVVYGGGLIDGKGASWWDCYSNTKCESENPTALHFHACENLILRQLTHINSPRNHIS
LNACHGSHISELHIIAPNESPNTDGIDIAESSNIIIENSKIETGDDCIAINHGSSSIDIV
GIFCGPGHGISVGSLGRNGAQESVEKIYVRNCTFNGTTNGARIKTWIGGQGYARKVTFED
IIVIEANNPVIIDQEYNPYDSVYAVKVSDVTFRNIRGTSISKHAIQLHCDEALSCTNIIL
EGINITSSIGEEVHASCKNVNGICTSCIPYVPCLFQE
NT seq
1194 nt
NT seq
+upstream
nt +downstream
nt
atgaaatttcaatttgtttcctttgtaatgtttgttgttgttgctgctgctgctgcttca
ccttatacaagtcccagcttcaatgttcttgactatggtgctgttgggaatggcaaaaat
gatgaaacaagggcttttatggatgcatggaaagatacatgtagtgaagttcatgacaac
ccaacacttctgatacctaaaggaaaaacattcatgttgcagccgatgtggtttcaaggt
ccttgcaactctgcaaccatttatataaagattgagggaactatcatagccccaaacaac
attaaggcttggaaatggcccaataacattgacagactcacatggatccgtttcatagag
ataagtgggcttgtggtttatggtggtggactcattgatggaaaaggtgcttcatggtgg
gattgctattctaataccaagtgtgaaagtgaaaatccaacggctctgcattttcatgca
tgtgaaaatctaattctaaggcaattgactcacataaatagcccaagaaatcatataagt
ttgaatgcatgtcatggctcacacatctctgaactacatattattgcaccaaatgaaagc
ccaaacactgatgggattgacattgcagaatcatcaaatatcatcattgagaattcaaag
attgaaactggtgatgattgtattgccattaatcacggttcgagttcaattgacattgtt
ggaattttttgtggacctggccatggaataagtgtggggagcctaggaagaaatggagct
caagaatcggtggaaaagatatatgtgcgaaattgcactttcaatgggacaacaaatgga
gccagaatcaagacatggataggaggacaagggtatgcaagaaaagtcacatttgaggat
ataatagtaattgaagctaacaatcctgtgattattgatcaagaatacaatccgtacgat
agtgtatatgcagtgaaagtgagtgatgttacttttcgcaacataagaggaacatcaatt
tctaagcatgcaattcaattacattgtgatgaagccctaagttgcacaaacattatactt
gaagggattaatataacatcttcaataggagaggaagttcatgcatcatgtaaaaatgta
aatgggatatgcacttcatgtattccatatgttccatgtctttttcaagagtga
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