Trifolium pratense (red clover): 123885368
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Entry
123885368 CDS
T08949
Name
(RefSeq) DNA mismatch repair protein MSH7 isoform X1
KO
K08737
DNA mismatch repair protein MSH6
Organism
tpra
Trifolium pratense (red clover)
Pathway
tpra03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
tpra00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
123885368
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tpra03400
]
123885368
DNA repair and recombination proteins [BR:
tpra03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
123885368
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_I
MutS_II
AAA_29
Motif
Other DBs
NCBI-GeneID:
123885368
NCBI-ProteinID:
XP_045790598
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Position
LG5:complement(353448..362766)
Genome browser
AA seq
1140 aa
AA seq
DB search
MNRQKSILSFFHKTSPENRTSGGAQSSVPSFQQTDCNIKTVVNPPPPADDVRGTDTPPEK
VPRKVLPANFASNTNTGGLFESIMHKFIKVDDGDKVNQRSQSSNHDSFSKPSPSSAIFTD
TTRKGLQKEEAAAFKPVVKAKDNVNQRSQSSNHDSFSKPSPSSTIFTDTNLKRLQKEEAA
AYKPVVKAKDNAVNFKEKVNRENMFLVENDDDITGPETPGVQPLTSNVKRSREDGTKLSS
LRDSGKRVRFLDDSLTLDMTKKELEVASKFEWLDPSRIRDANGRRPNDSLYDRTTLYIPP
EVMKKMTASQKQYWSVKCKYMDVVLFFKVGKFYELYEMDAEIGHKELDWKITMSGVGKCR
QVGISESGIDDAVKNLVARGYKVGRVEQLETSEEAKARGANSVILRKLVQVVTPSTNVDG
NIGPDANHLLAIKEENNGSDNGSVSYGFAFVDCARLRLWVGSIDDDASCSALGALLMQVS
PKEIIYESRGVSKEAQKAFRKFSLNGSTTLQLTPMRSITDLVNSEISDLIHSKGYFKGSA
NSLDHVLTKVIHREITLSALGGLIGHLNRLMLDEILQNGDIYPYQVYKGCLKMDGPTYIN
LEIFGNSDDGGKSGTLYKYLDNCVTSSGKRLLRNWICCPLKDAEGINNRLDVVDHLIASP
EIVSHIAQHLRKLPDLELLIGRTKSSLKVSSPVLLPLLVKKILKQRVKVFGSLVKGLRTT
LSLLLLLQKEQPLISSLTKVFKLPVLNGSEGLDQFLTQFEAAVDSDFPNYQNHDVTDTDA
ETLTILAELFLEKAAQWFEVVHAINCIDVLRSFAVTSSFSSGTMSRPVIVPTSQSTNKDS
GVPVLKMKGLWHPFALGETGREPVPNDMILGENEDGNHPRTLLLTGPNMGGKSTLLRATC
LAVIMAQLGCYVPCENCVLSVVDIIFTRLGATDRIMAGESTFFIECTETASVLQNATQDS
LVILDELGRGTSTFDGYAIAYAVFRHLIEKVNCRLLFATHYHPLTKEFASHPRVTMQHMA
CAFKSKSDTFSKQDQELVFLYRLASGACPESYGLQVALMAGIPEKTVNIASKASQQMKKS
IGKNFRSSEQRSEFSTLHEEWLKTLMSMAQIEDCESLDDDVMDTLVCLQYELKTSFKSGK
NT seq
3423 nt
NT seq
+upstream
nt +downstream
nt
atgaatcgccaaaaatcgattctctcattcttccacaaaacctcgccggaaaatcgcact
tccggcggcgcacaatcctccgttccgtcgtttcagcaaaccgactgtaatatcaagaca
gtcgtcaatccaccaccgccggcagatgacgtcagaggaacagacacaccgccggagaaa
gtgcctcgtaaggttttaccggcgaacttcgcgtcaaacacgaacaccggcggtttgttt
gagagtatcatgcataaatttatcaaggtcgatgatggcgataaagttaaccagaggagc
cagtcatcaaatcatgatagcttctccaaaccatctccatcatcagctatatttactgat
actacccggaaaggactgcagaaagaagaagcagcagcttttaaacctgtggtgaaagcg
aaagacaatgttaaccagaggagccagtcatcaaatcatgatagcttctccaaaccatct
ccatcatcaactatatttactgatactaacctgaaaagactgcagaaagaagaagcagca
gcttataaacctgtggtgaaagcgaaagacaatgctgtaaattttaaggaaaaggttaac
cgtgaaaatatgttcctggttgaaaatgacgatgatattactggaccagaaaccccaggg
gtgcagcctcttacttctaatgtaaagcgaagtcgagaggatgggaccaaactttcttcc
ttgcgggattctggcaaacgagtcagatttcttgatgattcattgacactagacatgact
aagaaggagttagaagttgctagcaagtttgagtggcttgatccttctcgaataagggat
gcaaatggaagaaggcccaatgattctttatatgacaggacaacactttatatacctcca
gaggttatgaagaaaatgacagcatcacagaaacagtattggagtgttaaatgcaaatat
atggatgttgtgttattctttaaagtgggaaaattttatgagctttatgaaatggatgct
gaaattggccataaggagcttgattggaaaataacaatgagtggtgtgggaaaatgtcgg
caggttggtatatctgaaagcgggattgatgatgctgttaaaaatctggttgctcgtgga
tataaggttgggcgagtggagcaattggagacatctgaagaagcaaaagcaagaggagct
aattctgttattctaagaaaattagttcaggtagtcaccccatctaccaatgtggatggt
aatattggccctgatgcaaaccatcttcttgcaataaaagaggaaaacaatggctcggat
aatggttcagtatcatatggatttgcttttgttgattgtgcccgtcttaggttatgggtt
ggttctattgatgatgatgcgtcctgttctgctttgggggctttattgatgcaagtgtca
ccgaaggaaattatatatgaaagcagaggggtgtccaaagaagctcagaaagcatttaga
aaattctctttaaatggctccacaacactacaattgactcctatgcggtcgatcaccgac
ttggtgaactcggaaattagtgatttaattcactcaaagggatacttcaagggttcagct
aattcactggatcatgtgctgaccaaagtgattcatcgtgaaatcactttgtctgctctt
ggtggactaataggtcatctaaatagattgatgctagatgagatcctacagaatggggac
atatatccgtaccaggtttataagggttgcctcaaaatggatggtccaacttatataaat
ctagaaatctttggcaatagcgacgatggtggaaaatcaggtaccttgtacaagtatctt
gataactgcgttacttcatctggaaagaggcttcttaggaactggatctgctgtccactg
aaagatgctgaaggaattaataataggcttgatgtggtagatcatctaatagcttcccct
gaaattgtgtctcatattgcacaacatcttcgcaagcttccagatttggaactattaatt
ggccgaacaaagtccagcctaaaagtatcaagccctgtcttactgcccttgttggtgaag
aaaatattgaaacagagggtgaaagtttttgggtcacttgtgaaaggccttcggactact
ttgagtttgttgcttctactacagaaagagcagcctctaatatcatccttgaccaaagtt
tttaaacttccagttctgaatggcagcgaagggctcgatcaatttcttactcagtttgaa
gcagctgtagatagtgacttcccaaattaccaaaatcatgatgttacagatacagatgct
gaaacactcacaatacttgctgaattatttttggagaaagctgctcaatggtttgaagtt
gttcatgccatcaattgcattgacgtactaagatcttttgctgttacttctagcttttca
agtggaactatgtctaggcctgtcatagtgccaacatcacaaagtaccaataaagatagt
ggagtgcctgtgctcaaaatgaaggggctatggcatccatttgcccttggagagactggc
cgtgagcccgttccaaatgatatgatccttggtgagaatgaagacgggaaccatcctcgt
actttgcttctgacaggcccaaacatgggtggaaaatcaacacttttacgtgctacctgt
ctagctgttatcatggcccagttaggctgctatgtgccgtgcgaaaattgtgttctctca
gttgtggatatcatcttcacacggcttggagccacagatagaatcatggcaggcgagagt
accttctttattgagtgtacagaaactgcatcggtgcttcagaatgctactcaagattct
cttgttatccttgatgaattgggtcggggaacaagcacttttgatggctatgccattgca
tatgctgtattccggcatctgattgaaaaggttaactgtcgcttgctattcgcaacacat
taccatccgctaacaaaagaatttgcctctcatccgcgtgttacaatgcaacacatggcc
tgtgctttcaagtcaaaatctgataccttttccaaacaagatcaggagctagtcttccta
tatcgtcttgcctctggagcatgtcccgaaagctacggattacaggttgcgctcatggct
ggaatcccagaaaaaactgtaaacattgcttcaaaggcaagccaacaaatgaaaaaatca
attggaaaaaacttcaggtcaagtgaacagagatcagagttttcaactcttcatgaagaa
tggttgaagacattgatgtctatggcacaaatcgaggattgtgaatctctcgatgatgat
gttatggatacattagtctgtttgcagtatgaactgaaaacttcgtttaaatcgggcaaa
tag
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