Trifolium pratense (red clover): 123885863
Help
Entry
123885863 CDS
T08949
Name
(RefSeq) autophagy-related protein 16-like
KO
K17890
autophagy-related protein 16-1
Organism
tpra
Trifolium pratense (red clover)
Pathway
tpra04136
Autophagy - other
tpra04145
Phagocytosis
Brite
KEGG Orthology (KO) [BR:
tpra00001
]
09140 Cellular Processes
09141 Transport and catabolism
04145 Phagocytosis
123885863
04136 Autophagy - other
123885863
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
tpra04131
]
123885863
03029 Mitochondrial biogenesis [BR:
tpra03029
]
123885863
Membrane trafficking [BR:
tpra04131
]
Autophagy
Autophagosome formation proteins
Atg12 conjugation proteins
123885863
Others
Specific organelles associated proteins
Auto phagosome
123885863
Mitochondrial biogenesis [BR:
tpra03029
]
Mitochondrial quality control factors
Mitophagy factors
Autophagy-related proteins
123885863
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Beta-prop_WDR5
Beta-prop_WDR3_1st
Beta-prop_THOC3
Beta-prop_IFT122_1st
WD40_Prp19
WD40
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_WDR3_2nd
EIF3I
WD40_MABP1-WDR62_2nd
WD40_Gbeta
Beta-prop_EML_2
Beta-prop_TEP1_2nd
Beta-prop_WDR36-Utp21_2nd
WDR55
DSE1_N
Beta-prop_WDR90_POC16_2nd
Beta-prop_WDR36-Utp21_1st
Beta-prop_CAF1B_HIR1
Beta-prop_EML
WDR90_beta-prop_4th
Beta-prop_TEP1_C
Beta-prop_VPS8
Beta-prop_WDR41
ANAPC4_WD40
Beta-prop_SCAP
ATG16
Beta-prop_WDR75_1st
WD40_MABP1-WDR62_1st
CFAP251_N
Beta-prop_NWD2_C
Beta-prop_RIG_2nd
Beta-prop_NOL10_N
ASA1
Beta-prop_HPS5
Beta-prop_ACSF4
NBCH_WD40
Beta-prop_SPT8
Beta-prop_WDR35_TULP_N
Beta-prop_IFT140_1st
Beta-prop_Aladin
WD40_RFWD3
WDR54
Beta-prop_WDR19_1st
Beta-prop_DCAF4
Beta-prop_Nup120_160
Beta-prop_RIG_1st
Ge1_WD40
Beta-prop_EIPR1
Beta-prop_NUP159_NUP214
KNTC1_N
TRM82_WD
Beta-prop_IP5PC_F
Beta-prop_Vps41
PEP5_VPS11_N
Small_EgtBD
Cytochrom_D1
Motif
Other DBs
NCBI-GeneID:
123885863
NCBI-ProteinID:
XP_045791159
LinkDB
All DBs
Position
LG5:complement(56750360..56753283)
Genome browser
AA seq
514 aa
AA seq
DB search
MAKSRKSQEEIAIEAINHALKALRKRHLLEEAAHAPAILALSRPIISQGSEWKEKAENLE
LELQQCYKAQSRLSEQLVVEVAECRVSKGLLQEKETAIVDMQKELTELRDERCQLKTDLE
QKVKEVELLLGENSELKAHLEQMTIKANAAEAENKMLIDRWMLEKMKDAERLNEANALYE
DMVQRLKASGLEQLAREQVDGIVRRSEEGAEFFSESDIPSNCKYRLNAHEGGCASLLFEY
NSSKLITGGQDRSVKVWDTNTGSLSSSLNGCLGSVLDLTITHDNRSVIAASSSNNLYVWD
LSSGRVRHTLTGHTDKVCAVDVSKVSSRHVVSAAYDRTIKVWDLMKGYCINTIMFPSNCN
ALCFSVDGQTIFSGHVDGNLRLWDIQSGKLLSEVAAHSLAVTSISLSRNGDIALTSGRDN
LHNLFDVRSLEVCGTLRATVNRVASNWSRSCISPDNSHVAAGSTDGSVHIWSISKGEIVS
TLKEHTSSVLCCSWNGMGMPLASADRNGIVSIWS
NT seq
1545 nt
NT seq
+upstream
nt +downstream
nt
atggcaaaatctcgcaaatcgcaagaagaaattgcgattgaagcaatcaatcatgctttg
aaagctcttcggaaacgccatttgcttgaagaagccgctcatgctcctgcaattctcgca
ctttctagacctatcatttctcagggttctgaatggaaagagaaagctgagaacttggaa
ttggaacttcagcaatgctataaagcgcaatctcggttgtcggagcaacttgttgtggaa
gtagctgagtgtagagtttcaaaaggtttgcttcaagagaaagaaactgcaattgttgat
atgcagaaggagttaacagaattgagggatgagcgctgtcaattaaagacggatttggaa
caaaaggttaaagaagtagaattacttctgggtgagaattcagaacttaaagcacatcta
gagcagatgactatcaaagccaatgcagctgaagctgaaaataagatgttgattgaccgc
tggatgttagaaaaaatgaaggatgctgaacgcctaaatgaggcaaatgcactatacgaa
gacatggttcagaggctaaaggctagtggcctagaacaacttgctagggaacaggtggat
ggaattgttcgccgaagtgaagaaggtgctgaattcttttcagagtccgacattccttcc
aattgcaaatacaggctaaatgcacatgaaggaggttgtgcttccttattgtttgagtac
aattctagtaaattgattaccgggggacaggatcgttcagttaaagtgtgggatactaat
acaggatccttgagttctagtcttaatggctgccttggctcagtattggatctcactatc
acccatgataatcgatctgttattgctgcaagcagctcaaacaacttgtatgtgtgggat
ctgagctcaggccgtgtccgtcatacccttactgggcacacagataaagtttgtgctgtt
gatgtcagcaaggtttcaagtcgtcacgttgtcagtgcagcatatgaccgtactataaaa
gtttgggacttgatgaaaggttactgcataaatacaatcatgtttcccagcaactgcaat
gctctttgcttcagcgtagatggacagaccatattttcaggacatgttgatggtaatctt
cggttatgggacattcagagtggaaagctactaagtgaggttgctgcacattcacttgcc
gtcacgtcaatatccctttctcgaaatggagatattgcattgactagtggaagggataat
ttacacaatttgtttgatgtacgatctctggaagtttgtggcacattacgagccacagta
aacagagtggcttctaattggagtcgctcgtgtatcagtccagacaacagtcatgttgca
gctgggtctactgatggatctgttcatatatggtcaatttctaaaggtgaaatcgtcagt
actctgaaggagcatacttcttctgttctctgttgtagttggaatggaatgggaatgccc
cttgcttcagctgacaggaatgggattgtatccatttggtcataa
DBGET
integrated database retrieval system
