Trifolium pratense (red clover): 123886920
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Entry
123886920 CDS
T08949
Name
(RefSeq) probable polygalacturonase At3g15720
KO
K01184
polygalacturonase [EC:
3.2.1.15
]
Organism
tpra
Trifolium pratense (red clover)
Pathway
tpra00040
Pentose and glucuronate interconversions
tpra01100
Metabolic pathways
Module
tpra_M00081
Pectin degradation
Brite
KEGG Orthology (KO) [BR:
tpra00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
123886920
Enzymes [BR:
tpra01000
]
3. Hydrolases
3.2 Glycosylases
3.2.1 Glycosidases, i.e. enzymes that hydrolyse O- and S-glycosyl compounds
3.2.1.15 endo-polygalacturonase
123886920
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GFIT
Motif
Pfam:
Glyco_hydro_28
Pect-lyase_RHGA_epim
Motif
Other DBs
NCBI-GeneID:
123886920
NCBI-ProteinID:
XP_045792148
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Position
LG5:complement(55010514..55014077)
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AA seq
376 aa
AA seq
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MQRLINFVIILGFISPCLCTRLNVGTKDGIYNVMDYGARGDGKSDDTQAFASAWSNICKA
RGKSTLIIPAGKSFFVTKVHFSGPCNAKIHIQLEGKIVAPPKEAWKGGEKLILIENLDGL
TIDGNGEGGAYGDGSTWWNCPGGCEHERPGILHFHSCKDLSVRNIKITNSPRSHISVNNC
IGATFSQISIDSPAISPNTDGFDISFSKNILVEDSNIKSGDDCIAINGGSFFINATRITC
GPGHGISVGSLGKVRDNDQVSDVYVRNCTFIGTTNGGRIKTVSGGSGYAKRITFEEINLV
NVKNPIIIDQHYPKDLELDSDVSVSEVTYRGFTGTCEGNVAVKFECRKNLSTVCHNAHGT
ATNTIPVVSCLQQNVL
NT seq
1131 nt
NT seq
+upstream
nt +downstream
nt
atgcaacgactcattaattttgtcatcattcttggttttatttctccttgtctatgtaca
aggttgaatgttggaaccaaagatggtatttataatgtgatggattatggtgcacgtggt
gatggcaaatctgatgatacacaagcatttgcaagtgcatggagtaatatatgtaaagca
agaggaaagtcaacactaattataccagcaggaaaatcattttttgtgacaaaagtacat
tttagtggtccttgtaacgccaaaattcacattcagttggaaggaaaaatagttgcacca
cctaaagaagcctggaaaggtggcgaaaaattaattttaatcgaaaatttagacggactt
acaattgatggcaatggtgaaggaggagcatatggagatggttcaacttggtggaattgt
cctggtggttgtgaacatgaacgacctgggatcttgcattttcattcctgcaaggatctt
agtgttagaaacataaagatcactaatagcccaagatctcatatatcagttaataattgt
attggtgcaacattttctcaaatatcgattgattctcctgctataagccccaacactgat
ggttttgacatttctttttctaagaatatcttggtagaagattcaaacataaaatctggt
gatgattgtattgccatcaatggtggttcattttttattaacgccactagaattacttgt
ggaccaggccatggaataagtgttggtagccttggtaaagtaagagataatgatcaagtt
tctgatgtttatgtacggaattgcaccttcattgggactacaaatgggggaagaatcaaa
acagtgtcgggtggttcgggttatgcaaaacgtattacttttgaggagataaatttagtt
aatgttaaaaatccaataattatagatcaacattatcctaaagatttggagctggattca
gatgtttcggttagtgaagtaacatatcgaggatttaccggaacttgtgaaggcaacgta
gctgttaagttcgagtgcagaaaaaatctttcaacggtttgccacaatgcccatggaact
gctacaaatactattccagttgtctcttgcctacaacaaaatgttttatag
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