Trifolium pratense (red clover): 123886925
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Entry
123886925 CDS
T08949
Name
(RefSeq) polygalacturonase-like
KO
K01184
polygalacturonase [EC:
3.2.1.15
]
Organism
tpra
Trifolium pratense (red clover)
Pathway
tpra00040
Pentose and glucuronate interconversions
tpra01100
Metabolic pathways
Module
tpra_M00081
Pectin degradation
Brite
KEGG Orthology (KO) [BR:
tpra00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
123886925
Enzymes [BR:
tpra01000
]
3. Hydrolases
3.2 Glycosylases
3.2.1 Glycosidases, i.e. enzymes that hydrolyse O- and S-glycosyl compounds
3.2.1.15 endo-polygalacturonase
123886925
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Gene cluster
GFIT
Motif
Pfam:
Glyco_hydro_28
Pect-lyase_RHGA_epim
Motif
Other DBs
NCBI-GeneID:
123886925
NCBI-ProteinID:
XP_045792152
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All DBs
Position
LG5:complement(55092320..55095981)
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AA seq
486 aa
AA seq
DB search
MHALALFMIFTSKLAIAIGETLNIENFGANPNGETDSTNAILTTWARACSSTAPTTIYVP
KGKFLVSDSVVFKGSCNNNDITVIIDGTLLANSNYDVIGNEESWLLFEDVDGVSIIGNGF
LDGQGTSLWDCKRSGESCPMGATNLRFRNSNNIVINGITSLNSQMFHIVIDKCNNVKIQE
VKISAAENSPNTDGIHVESSSSVNILNSNIATGDDCISIGPGTTNLWIEDIVCGPGHGIS
VGSLGKEFEELGVEHVTVKTVKFIGTTNGVRIKSWGKPSNGFARNILFQHVTMVNVQTPI
LIDQNYCPGRKDCPSQASGIKISNIMYQNIHGTSATEVGVKFDCSPTNPCTGICLEDVML
TYENQHGEPLSLYNNALVQSNNCVVQPGEPTTSGVKHNQPFLLMEPLPSINKVYYMVTQE
ESNNVALLTQPDNVTISEDSNTLINVAYDSRKSQDRGKGHASSFNGHGKKDCYCTYCNRR
GHTIDT
NT seq
1461 nt
NT seq
+upstream
nt +downstream
nt
atgcatgctttagcactctttatgatcttcacatctaaattggccattgctattggtgaa
actctaaatattgaaaattttggggccaaccctaatggggaaactgactcaacaaatgca
atccttactacgtgggctagagcatgtagctcaacagcaccaaccacaatttatgtgcca
aaaggaaagttcttagttagtgatagtgtagtgtttaagggtagttgcaataacaatgat
atcacggttattatcgatggtacattattagcaaattctaattatgatgttattggaaat
gaagagagttggttgctttttgaagatgttgatggagtttcaattattggtaatggtttt
cttgatggtcaaggcacaagtttgtgggattgtaagagatccggtgagagttgtccaatg
ggtgctacgaacttgagatttagaaattccaacaacatagttatcaatgggataacctca
ttgaatagtcaaatgtttcacatagtgatagacaaatgcaataatgtcaaaatacaagag
gttaagatatcagctgcagaaaatagtcctaacacagatggtattcatgttgaatcctca
tcaagtgtcaacattctcaattccaatatagcaacaggtgatgattgcatctcaattggg
cctggaacaacaaatttatggatagaagatattgtttgtggtcctggtcatggaattagt
gttggaagtttggggaaggaatttgaagagcttggtgtggaacacgtgacagttaaaaca
gtgaaatttatcggaacaaccaatggtgtacgaattaagtcttgggggaaacctagcaat
ggatttgcaagaaacatccttttccaacatgttactatggttaatgttcaaactcctatt
ttgatcgaccaaaattattgtcctggtcgaaaggattgtcccagtcaggcttcagggatt
aaaattagcaacattatgtaccaaaatattcatggaacttcagcaacagaggtaggagtt
aaatttgattgcagtccaacaaatccatgcactggaatatgcttagaagatgtgatgctt
acatatgaaaaccaacatggtgaaccattatcattatataacaatgcattagttcaatcc
aacaattgtgtagttcaacctggtgaacccaccactagtggagtgaagcacaatcaacca
tttttactaatggaaccattaccctcaatcaacaaagtttactatatggttactcaagaa
gagagcaacaatgttgcattactaacacaacctgataatgttactatttctgaggattcc
aatactctgattaatgttgcttatgattcaagaaaatcacaagatcgtggcaaaggtcat
gcatcgtcttttaatggacatggcaagaaagattgttactgcacttattgcaacaggcga
ggtcacacaatagacacatga
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