Trifolium pratense (red clover): 123886942
Help
Entry
123886942 CDS
T08949
Name
(RefSeq) probable polygalacturonase At3g15720
KO
K01184
polygalacturonase [EC:
3.2.1.15
]
Organism
tpra
Trifolium pratense (red clover)
Pathway
tpra00040
Pentose and glucuronate interconversions
tpra01100
Metabolic pathways
Module
tpra_M00081
Pectin degradation
Brite
KEGG Orthology (KO) [BR:
tpra00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
123886942
Enzymes [BR:
tpra01000
]
3. Hydrolases
3.2 Glycosylases
3.2.1 Glycosidases, i.e. enzymes that hydrolyse O- and S-glycosyl compounds
3.2.1.15 endo-polygalacturonase
123886942
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Glyco_hydro_28
Pect-lyase_RHGA_epim
End_N_terminal
Motif
Other DBs
NCBI-GeneID:
123886942
NCBI-ProteinID:
XP_045792164
LinkDB
All DBs
Position
LG5:56155535..56158664
Genome browser
AA seq
369 aa
AA seq
DB search
MQRFNFFVIILGFISPCLCTRLNVGTENDNYNVMDYGANGDGKTDDSQALVNAWSSACKH
GGTLTIPAEKSFMVTNVKFRGPCKPKIHIQFDGKIVAPPKEAWKSGDYLIYIDNLDGLTI
DGNGHGGADGGGSTWWHCKNCKRPGVQVFHFHSCKNLKVSNIMVTNSPSGHVSVNQCNGA
TFSHISINSPPNSPNTDGFDISFSSNILVEDSNIKSGDDCIAINGDSSFINATGVTCGPG
HGISVGSLGKVRPNDKVSDVHVRNCTFTGTSNGGRIKTKMGGSGYAKNIIFEEIILNNVK
NPIIIDQKYKNFGLDTDVVVSDVTFRGFTGTCSGDIAINLDCRKKLSVICNNAYGTATNT
IPSVTCLLN
NT seq
1110 nt
NT seq
+upstream
nt +downstream
nt
atgcaaaggttcaacttttttgttatcattcttgggtttatttctccttgtctatgtacg
agattgaatgttggaacagaaaatgacaattataatgtgatggattatggtgcaaatggc
gatggaaaaactgatgattcacaagccttagtaaatgcatggagtagtgcatgtaaacat
ggagggacgttaactataccagcagaaaaatcattcatggtgacgaatgtaaaatttaga
ggtccttgcaaacccaaaattcatattcagtttgatggaaaaatagttgcaccccctaaa
gaagcgtggaaaagtggagactatttgatttacattgataatttagacggactcacaatt
gatggtaatggtcatggaggagctgatggaggtggttcaacttggtggcattgcaaaaat
tgtaaacgacctggggtacaggtctttcattttcattcctgcaagaatctcaaagttagt
aacataatggtcactaatagcccaagtggtcatgtctctgttaaccagtgcaatggtgca
acattctcacatatatctattaactctcctcctaatagtcccaacactgatggctttgac
atttctttttctagtaatatattggtagaagattcaaacataaaatctggtgacgattgt
attgccattaacggtgactcctcttttatcaatgctactggagttacttgtggaccaggc
catggaataagtgttggtagcctcggtaaagtaagacctaatgataaagtttccgatgtt
catgtacggaattgcaccttcaccggaacttcaaatggaggaagaatcaagacaaaaatg
ggtggatcaggttatgcaaaaaatattatttttgaggaaatcatcctaaataatgtcaag
aaccctattattatagatcagaaatataaaaattttggactggatacagatgtggtggtg
agtgatgtaacatttcgaggatttacgggaacttgttctggtgacatagctattaattta
gattgtagaaagaagctttcagttatttgcaacaatgcctatggaactgctacaaatact
attccaagtgttacttgtctacttaattaa
DBGET
integrated database retrieval system
