Trifolium pratense (red clover): 123887128
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Entry
123887128 CDS
T08949
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 20 isoform X1
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
tpra
Trifolium pratense (red clover)
Pathway
tpra03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
tpra00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
123887128
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
tpra03041
]
123887128
03009 Ribosome biogenesis [BR:
tpra03009
]
123887128
Enzymes [BR:
tpra01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
123887128
Spliceosome [BR:
tpra03041
]
Complex A
U1 snRNP components
U1 related factors
123887128
Complex B
123887128
Ribosome biogenesis [BR:
tpra03009
]
Eukaryotic type
Pre-60S particles
Helicases
123887128
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
Motif
Other DBs
NCBI-GeneID:
123887128
NCBI-ProteinID:
XP_045792373
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All DBs
Position
LG5:51989424..51993865
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AA seq
627 aa
AA seq
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MNPYDNRYSDSTSFRGRRSDLVGPMPPPNFGRGGPAPYTAPYAPHAPTGFGSASVTPVPH
FLPPPGGGGFSIGRGGGGGGGGFGPRMANGDRKYDTGRFGGSSGGRGRGGGGGRGGSQGF
RGSGRGGSGGRGGGFGGKHGSSKDDLNNINLPKQDFRNLVPFQKNFYIESPQIQAMSDIQ
VMQYRASRDITVEGHDVPKPILSFHEANFPDYCLDVIAKLGFVEPTPIQAQGWPMALTGR
DLIGIAETGSGKTLSYLLPALVHVSAQPRLAQGEGPIVLVLAPTRELAVQIQQEAMKFGG
RSNIRCTCIYGGAPKGPQIRDLRMGVEIVIATPGRLIDMLEAQYTNLQRVTYLVLDEADR
MLDMGFEPQIRKIVNQIRPDRQTLYWSATWPKEVETLARQFLQNPYKVVIGSPYLKANQS
INQVVEVVSDMEKYNRLIKLLKEVMDGSRVLIFTETKKGCDQITKQLRMDGWPALSIHGD
KNQAERDWVLAEFKSGRSPIMTATDVAARGLDVKDIKCVVNYDFPSSLEDYVHRIGRTGR
AGAKGTAYSFFTRANAKYARDLIKILQDAGQIVSPALSELTRSAGFGQQAGRGGFRSRGR
GGGYGNRSSTSGSNAIPVGGKRPWQSR
NT seq
1884 nt
NT seq
+upstream
nt +downstream
nt
atgaacccttacgacaatcgttactccgattccacttcttttcgcggccgccgcagtgat
cttgttggacctatgccgccgcctaatttcggccgcggcggtcctgctccgtacactgct
ccttatgcaccacacgcacctaccggtttcggatccgcatctgttactccggttcctcac
tttttgcctcctcctggtggaggtggatttagcataggtcgtggtggtggtggtggtggt
ggtggttttggtcctagaatggccaacggtgatagaaagtatgacacaggtcgttttggt
ggtagtagtggtgggagaggtcgtggtggcggtggtggtagaggtggaagtcaaggtttt
agaggctctggtagaggaggtagtggagggagaggtggtgggtttggaggtaaacatgga
tcttctaaggatgatttgaataacattaatcttccaaagcaagattttaggaatttggta
ccttttcagaagaatttctatattgaaagtcctcagatacaagctatgtctgatattcaa
gttatgcagtaccgagctagtagggatatcactgttgaagggcatgatgtgccgaagcca
attctgtcttttcatgaggctaattttcctgattactgtcttgatgtcattgccaagttg
ggttttgttgagcccactccaattcaggctcagggttggcccatggctcttaccggtaga
gatttaattggcattgccgagactggctctggtaaaactttgtcgtatctacttcctgct
ttagttcatgtcagtgcacaacctcgtttggcacaaggggaaggtcccattgtcttggtt
ttagcaccgactagagagttagctgttcaaattcaacaagaagctatgaaattcggggga
cgatcaaatattagatgtacatgcatatacggcggtgctccaaagggccctcaaatccgt
gaccttagaatgggtgttgagattgttattgctactcctggacgtctaatagatatgttg
gaagctcagtatacaaacctgcagagagtgacataccttgtcttggatgaagctgatcga
atgttggatatgggttttgaacctcagattcggaagattgtaaaccagattcgaccagat
aggcagacattatactggagtgcaacgtggccaaaggaggttgaaactctggcaagacag
tttctgcagaacccatataaggtagttattggatcaccatatctaaaagcaaatcaatct
ataaatcaagttgttgaagttgtcagtgacatggagaaatataacagattgatcaagctg
ctgaaagaagtgatggatgggagccgagttctaatatttactgaaacaaaaaagggatgt
gaccaaattacaaaacaattgagaatggatggatggccagcattatccatccatggtgat
aaaaaccaggctgaaagggactgggttttggctgaatttaagagtggcagaagtccaata
atgactgccactgatgttgctgcacggggtcttgatgtgaaggacataaaatgcgtggtc
aattatgattttccatcaagccttgaagattatgtccacagaattggtcgaactgggcgt
gcaggggctaaaggaactgcatacagtttctttacccgtgctaatgccaagtatgctagg
gatttgattaagatcctacaagatgctggtcagattgttagtcctgcattgtctgaattg
actcggtcagctggctttggtcaacaggcaggaaggggaggctttcgatcaagaggacga
ggaggaggctatggcaatcggagttcaacatcaggatccaatgccattcctgtaggcggg
aagaggccttggcagtcccggtag
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