Trifolium pratense (red clover): 123887314
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Entry
123887314 CDS
T08949
Name
(RefSeq) SWI/SNF complex component SNF12 homolog
KO
K11650
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D
Organism
tpra
Trifolium pratense (red clover)
Pathway
tpra03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
tpra00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
123887314
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tpra03021
]
123887314
03036 Chromosome and associated proteins [BR:
tpra03036
]
123887314
Transcription machinery [BR:
tpra03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
123887314
Chromosome and associated proteins [BR:
tpra03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
123887314
PBAF complex
123887314
GBAF(ncBAF) complex
123887314
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIB
YEATS
Motif
Other DBs
NCBI-GeneID:
123887314
NCBI-ProteinID:
XP_045792570
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All DBs
Position
LG5:complement(49651964..49656463)
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AA seq
546 aa
AA seq
DB search
MNNNNNPPKIPATAQPSFLGSSSIAVNPPQPIHLLTQSHPQTQGSSSTFPGHFQLSQPQP
HVIAQQQPQFPNPRSHPQTQLQQQQQKQQQSVSQMHINNNTNVASPATAATTTTAAATTT
TSAKRAHQKSSSRPQGSPSGNQTSAFKTMELTPAPLRKKRNLQENLIPEKVAKLVPESAI
YTRLLELEAQIDAVLNRKKIDVQEAVKNPHSVRKTLRVYVYNTFSNQTKLDSGKVGGVEE
PSWSLRLTGRILEEVGKDSVVGGVSKKESLYPKFSAFFKKITVYLDQGFYPDNHVMVWDS
ARSSVQQDGFEVKRKGDKEFTAVIRLTMNYSPEKFMVSTPLAKVLGIEFDTRPRIMAALW
NYVKFRKLQSPNDPSFFMCDASLQKVFGEEKMKFSLASQKISQHLSQPQPIHLEHKIKLS
GNCPAGTACYDVQVDVPLPLQKDMSAFLTSMESHKEIDAFDEVICTSVKKIHEHLRRRAF
LLGFSQSPAEFINALIVSQGKDLKLVAGDASHNAEKEQRSEFYNQPWVEDAVIRYLNRKS
ARTDAP
NT seq
1641 nt
NT seq
+upstream
nt +downstream
nt
atgaacaataacaataatccacccaagattccggcgacggcgcaaccgtcgtttttaggc
agttcatcaatcgccgttaacccaccacaaccaattcatcttctcactcagtctcatccc
caaactcaaggttcttcttcaacattccccggtcactttcagctatcacaacctcaaccc
catgtcattgcacaacaacaaccacaatttccaaaccctcgttctcaccctcaaacccaa
ctacaacaacagcagcagaagcagcaacaatctgttagccaaatgcatattaacaataac
actaatgtggcttctcctgcaactgcggcgacaactactactgctgctgctacaactact
acatctgcaaagcgtgcacatcagaagtcgagttcgcgtccacaaggttcaccgagtggt
aatcaaacatctgcttttaagactatggagttaactcctgctcctttaaggaaaaagagg
aatttacaggagaatttaataccggaaaaagtggctaagcttgtgcccgagtctgcgatt
tatactcggttacttgaacttgaggctcagatagatgctgttttaaataggaaaaagatt
gatgtgcaggaggctgttaagaatcctcattccgttaggaaaactctccgtgtttatgtg
tataatacattttcaaatcagacaaaattggattctgggaaggttggtggtgtggaggag
ccttcttggtcgcttaggctaacgggaaggatattggaagaagttggtaaggattctgtt
gtgggaggggtttcgaaaaaggaaagtttgtacccaaagttttcggctttctttaagaaa
attacggtgtacttggatcagggattctacccggataatcatgttatggtatgggatagt
gctcgttcgtctgtacaacaggatggttttgaggtgaagaggaaaggagacaaagaattt
actgcagttattaggttaacaatgaattactcgcctgagaagtttatggtttcaacaccg
ttggctaaagttttagggattgagtttgatacccgtcctaggataatggcagctctatgg
aactatgtgaaattcaggaagctacagagcccgaatgacccttcgttcttcatgtgtgat
gcttctctccaaaaagtgtttggggaagaaaaaatgaaattttcattggcttcacagaag
atatcacagcatttgtcacaaccacagcctatacacctggagcataaaatcaagctttct
ggaaattgtcctgctggaactgcgtgttatgatgtgcaggttgatgtgcctcttccacta
cagaaagatatgtcggcattcttaacaagtatggagagtcacaaagaaattgatgctttt
gatgaagtgatttgtacgtccgtaaagaagatccatgagcatcttaggagacgagctttc
cttcttggctttagtcagtctccagcagagtttattaatgccttgatagtttctcagggt
aaggatttaaagcttgttgccggagatgccagccataatgccgaaaaggaacagcgttct
gaattctacaatcaaccatgggttgaggatgctgtcattcgctatctgaaccggaaaagt
gctcgaactgatgctccttga
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