KEGG   Trifolium pratense (red clover): 123887330
Entry
123887330         CDS       T08949                                 
Name
(RefSeq) DNA-directed RNA polymerases II and IV subunit 5A-like
  KO
K03013  DNA-directed RNA polymerases I, II, and III subunit RPABC1
Organism
tpra  Trifolium pratense (red clover)
Pathway
tpra03020  RNA polymerase
tpra03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:tpra00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    123887330
  09124 Replication and repair
   03420 Nucleotide excision repair
    123887330
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:tpra03021]
    123887330
   03400 DNA repair and recombination proteins [BR:tpra03400]
    123887330
Transcription machinery [BR:tpra03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol I, II, III common subunits
     123887330
  RNA polymerase III system
   RNA polymerase III
     123887330
  RNA polymerase I system
   RNA polymerase I
     123887330
DNA repair and recombination proteins [BR:tpra03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      123887330
SSDB
Motif
Pfam: RNA_pol_Rpb5_C RNA_pol_Rpb5_N NA-iREase1 Mrr_cat MAS20
Other DBs
NCBI-GeneID: 123887330
NCBI-ProteinID: XP_045792588
LinkDB
Position
LG5:1104603..1109861
AA seq 209 aa
MVFDDEDVTKLYKIRRTILQMLADRNYSVSDTELSMSRKDFKSEFGEHFRREQLEIQKTH
KDDPSERVCVFFFDEAKLGVGVVKSITNRMGTENFTRGILVCQKPFSPQAKTAVATFNNF
SASRLEVFLEADLIVNITKHEKVPEHQVLTNAEKKALLKRYTVKEEQLPKILITDPIARY
YGLSRGQVVRIIRPSETAGRYITYRIVGS
NT seq 630 nt   +upstreamnt  +downstreamnt
atggtgtttgatgatgaagatgtaacaaaactgtacaaaatccgcagaacaattctacaa
atgttagcagatagaaactacagtgtatcagacacagaactatccatgtcgagaaaagat
ttcaaatccgaattcggcgaacattttaggagagaacaactagagattcaaaaaacacac
aaagatgatccttctgagagagtctgtgtcttcttttttgatgaagctaaactcggtgtt
ggcgtcgttaaaagtattactaatcgtatgggcacagaaaattttactagaggtattttg
gtttgtcagaaaccattctctcctcaagcaaaaacagctgttgctacatttaataacttc
agcgcttctcgtcttgaagtctttctggaggctgatctgatagtgaacataacaaagcac
gaaaaggtaccagaacatcaggttctcaccaacgccgaaaagaaagccttgctcaagaga
tacactgtcaaggaagagcagctacctaaaatcctgattactgatcctattgcgagatat
tacggactaagtcgtgggcaagttgtcaggattatccggccaagtgagactgcaggcaga
tatattacataccgaattgttggatcttga

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