Trifolium pratense (red clover): 123887339
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Entry
123887339 CDS
T08949
Name
(RefSeq) AMSH-like ubiquitin thioesterase 1 isoform X1
KO
K11866
STAM-binding protein [EC:
3.4.19.12
]
Organism
tpra
Trifolium pratense (red clover)
Pathway
tpra04144
Endocytosis
Brite
KEGG Orthology (KO) [BR:
tpra00001
]
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
123887339
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
tpra01002
]
123887339
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
tpra04131
]
123887339
04121 Ubiquitin system [BR:
tpra04121
]
123887339
Enzymes [BR:
tpra01000
]
3. Hydrolases
3.4 Acting on peptide bonds (peptidases)
3.4.19 Omega peptidases
3.4.19.12 ubiquitinyl hydrolase 1
123887339
Peptidases and inhibitors [BR:
tpra01002
]
Metallo peptidases
Family M67
123887339
Membrane trafficking [BR:
tpra04131
]
Endosome - Lysosome transport
Others
Others
123887339
Ubiquitin system [BR:
tpra04121
]
Deubiquitinating enzyme (DUB)
Ubiquitin-specific proteases (UBPs)
JAMM
123887339
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
JAB
USP8_dimer
Prok-JAB
Motif
Other DBs
NCBI-GeneID:
123887339
NCBI-ProteinID:
XP_045792598
LinkDB
All DBs
Position
LG5:3668021..3676637
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AA seq
517 aa
AA seq
DB search
MRSSYSSSSSSGAINVAMSAQKLEVDNRISLRFYYRIADNILRQADIFRAEKNIIDLYVM
LLRFSSLASETIPRHREYRSSPQSKKQSLKKGLLISLNELETLKPLVQQKINELNSKIAH
QQNGRGNFHSNNSVDFSPVRKQTLASNNGQIKAVRATAKEYVYQGSSGQQFSYVRPVEEQ
VRRLSLTLPPPKLETLSRHSILGPNGLNGQWRPPTINTGVRYPTNIDLSPVELPSLRPPL
EDVSLSNKDNSIAELHKLDLNSIPTDSEDRQPQRTQESPSLISFEATETSDRIEVIRQPS
PPPVLAEVQDLVPAVSPHINEGGCKTEIPSSDSCVHAESPLQLHISTALMEDFMKLAKSN
TKKNLETCGVLAGLLKNRKFYITALIIPKQESTSDSCQTTNEEEIFDVQDKRSLFPLGWI
HTHPTQSCFMSSIDLHTHYSYQIMLPESVAIVMAPTDSSKNHGIFRLTTPGGMSVIKQCD
QRGFHQHNQPPDGGLIYDTCTDVYMNPNLKFDVIDLR
NT seq
1554 nt
NT seq
+upstream
nt +downstream
nt
atgaggtcttcttattcttcttcttcttcttcgggtgcgatcaacgtcgctatgagtgct
cagaagcttgaagtcgataatcggatttctcttcggttctattatcggattgctgataat
atacttcgacaggccgacatttttcgtgcagagaagaacattattgacctatatgtcatg
cttttaagattttctagtttggcatctgagacaataccgcgtcaccgggagtatagatca
tctccacaaagcaagaaacaatcattgaaaaagggattgttgatttctttgaatgaactg
gagacgttgaaaccgttggtccagcagaagatcaatgagcttaacagcaaaattgctcac
caacaaaatggacggggaaattttcattcaaataattcagtggatttttctcctgtgaga
aagcaaactttggctagtaataatggacaaataaaggcagtcagagcaactgccaaggag
tatgtttaccaaggatcaagtggccaacagttctcttatgtcaggcctgtggaagagcaa
gtacgaagactatctctaactctgccacctccaaaattggaaactctctctagacattct
atccttggtcccaatgggcttaatgggcagtggcggccacctactattaatacaggggtc
aggtatccaactaacatagatctctctccagttgaactaccaagcttacggcctccctta
gaagatgtatctctgagtaataaagataatagcattgcggaactccataaattagattta
aattcaattcctaccgatagtgaagacagacagccccagcggactcaggaatctccttct
cttatctcttttgaagcaacagaaacctctgatcgaatagaagttatcagacaaccttct
cctccacccgtacttgctgaagtgcaagatttggttcctgcagtgtcacctcacattaat
gagggaggatgtaagacagagattccatcatctgacagttgtgttcatgccgagtctcct
ctgcaactgcatatttcaactgctttgatggaagactttatgaaacttgccaagtcaaat
actaagaaaaatttggagacttgcggtgtccttgctggtttgcttaaaaacagaaaattt
tatattactgctctaataatccccaagcaggaatcaacctcagattcttgtcagactaca
aatgaagaggaaatatttgatgtgcaggataaacgatcactttttcccctagggtggatc
catacacatcctactcaatcttgtttcatgtcatcaattgatctacacacacattactca
tatcagattatgctgccagaatctgttgcaatagtcatggcgccgacagatagttcaaaa
aaccatggcatttttcggctgacaacccctgggggaatgtctgttatcaaacaatgtgat
caacgcggctttcatcaacataaccagcctccagatggtggtcttatttacgacacatgt
acagatgtttacatgaacccaaatttaaaattcgatgtcatcgatcttcgatga
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