Trifolium pratense (red clover): 123887465
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Entry
123887465 CDS
T08949
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 46-like
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
tpra
Trifolium pratense (red clover)
Pathway
tpra03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
tpra00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
123887465
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
tpra03041
]
123887465
03009 Ribosome biogenesis [BR:
tpra03009
]
123887465
Enzymes [BR:
tpra01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
123887465
Spliceosome [BR:
tpra03041
]
Complex A
U1 snRNP components
U1 related factors
123887465
Complex B
123887465
Ribosome biogenesis [BR:
tpra03009
]
Eukaryotic type
Pre-60S particles
Helicases
123887465
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
WW
ERCC3_RAD25_C
AAA_22
Motif
Other DBs
NCBI-GeneID:
123887465
NCBI-ProteinID:
XP_045792739
LinkDB
All DBs
Position
LG5:complement(24524271..24533060)
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AA seq
1157 aa
AA seq
DB search
MATTEAASAGVGPRYAPDDPSLPAPWKGLIDGATGLLYYWNPDTNVTQYEKPTPLAPPVP
AASTPSLAPIPVTQQHGQGQQMMQQQQGGHYAQQHGQQMPQQMSPHVAQGTQQPNSQAAQ
PVQQQNSQISQPAQQPGLHQGRPQMMQPQGQQMMQYQGQQFQQMHQMPPQPIHPQQFGQG
GTQDHGSHLVQPQAPQFTPQNMHYMGYQQNMVTPRQPNSQQIQPNMHSSGQPNPQPNQHP
HNIHNQHFENQQDFKTAMPKMEEAEFKNGSQVGFSPSQYQQRSALPVQNNKNVPAEVSSG
QVTNASVNPAQPQQFRGYPGSMQQPSPTIQSQQGGSDLYYQQGPNPNFQNQMSPGIMHGH
PSNVHPVAQKMVHEDNVHGRAGNDYYYNSNKEMPPMGRQQPDMTQMPISRNPQDMRIGNS
PFQNNVPIGNGSGITVNAMSNMFTPPIGGPSPLSSNSFTRPPYGGSSDVTDLSAAELYCQ
QHEVTATGDNIPPPFMTFDSTGFPPEILQEVRSAGFSNPTPIQAQTWPIALQGRDIVAIA
KTGSGKTLGYLMPAFILLRQRRNNSLNGPTVLVLAPTRELATQIQEEVFKFARSSRVSCT
CLYGGAPKGLQLKELDRGADIVVATPGRLNDILEMKKIDFRQVSLLVLDEADRMLDMGFE
PQIRKIVNEIPPRRQTLMYTATWPKEVRKIASDLLVNPVQVNIGNVDELAANKSITQYVE
VVAQMEKQRRLEQILRSQERGSKIIIFCSTKKLCDQLARSIGRTFGAAAIHGDKSQGERD
WVLGQFRTGKSPILVATDVAARGLDIKDIRVVINYDFPNGVEDYVHRIGRTGRAGATGVA
YTFFSEQDWKHAGDLIKVLEGANQHVLPELRQIASRGPPSFGKDRGGMSRFDSGSGGGGR
WESGGRGNTRDSGFGGRGGMRDGGGFGGRGGMRDGGGFGARGGMRDAAGGQGGRGDFFPG
RGGNRGRGFGAPRGGSVGWGGRGDRGGPSDRYMDGRGQGRGRGRFDNRRDVPRSRDRSYS
RSPDRVRTWDINRSSSRSRSRSRSRSYSRSRSPRRSWSRGRSRSYSRSRSPRRSRSRGRS
YSRSRSPKPTRRVKSKFSDKIDIVAPEAGASDPIPGNTEGNSILGTEHVEQLPVVGNTGP
NNPEAVVDVSHQPPSDI
NT seq
3474 nt
NT seq
+upstream
nt +downstream
nt
atggcaacaacagaggcagcttctgctggggttggtcctagatatgcaccggatgatccc
tcgcttccggcgccgtggaaaggtttgattgatggagctactggtttgttatactattgg
aatcctgatactaatgttactcagtatgaaaagccaacaccgttggctccgcctgtgccg
gcggcttctacgccgagcttggcgcctataccggtgactcaacagcatgggcaagggcaa
cagatgatgcaacaacagcaggggggtcattatgctcaacagcatggtcaacagatgccg
cagcagatgagtcctcatgtggcgcagggtactcagcagccgaattctcaggctgctcaa
cctgtccagcagcagaattcacagatttcacagccggcgcaacagccagggttacaccaa
ggtagaccacagatgatgcagcctcaagggcagcagatgatgcagtatcaaggacagcaa
tttcagcagatgcatcagatgcctccacagccgattcatccacaacaatttgggcaagga
ggtactcaagatcacggttcgcatcttgtgcaaccgcaagcgccccagtttactcctcag
aacatgcattatatgggatatcaacaaaacatggttacacctaggcaacctaactcccag
cagattcaaccaaatatgcactcatctgggcaaccaaacccccagcctaatcaacatccg
cataacatacataaccagcattttgaaaatcaacaagattttaaaacagcgatgccaaag
atggaggaagcagagtttaaaaatggaagccaagttggtttctcaccatcacagtatcaa
caaaggagtgccttgcctgttcaaaacaataaaaacgttcctgccgaagttagttctggt
caagttactaatgcaagtgttaatcctgcccaaccacaacaatttaggggctatccagga
agcatgcaacagcctagcccaacaatacagtcacagcagggtggttctgatttatattac
caacagggtcctaatcctaatttccaaaaccagatgagcccgggaataatgcatggtcat
ccatccaatgtacatcctgttgcccaaaagatggtacatgaggacaatgtacatggtaga
gctggaaatgactattactataattctaacaaagagatgccgccaatgggtcgtcagcag
ccagatatgactcaaatgccgatttcccgaaatccgcaggatatgaggattggcaattcc
ccttttcaaaataatgtccccattggaaatggaagtggtattactgtgaatgctatgagt
aacatgttcactcctccaataggaggaccttctcctctttcaagcaactcttttacgagg
cctccttatggtggatcttcagatgttactgatctctcagcagctgaattatactgtcag
caacacgaagttacagcaacgggtgacaacattccaccaccattcatgacatttgattct
accgggttccctccagagatattgcaagaggtacgttctgcgggcttctcgaatccaaca
ccaatacaggctcaaacatggcccattgccctacagggtagagacatagtggctattgcc
aaaacaggctctgggaaaacactaggctacttaatgccggccttcattcttctcaggcag
agacgcaataattctctgaatggccccactgtattggttttggctccaacacgtgaactt
gcgacacagatccaagaggaggtcttcaaatttgcacggtcttcaagagtatcttgcacg
tgcttgtatggtggagcgcctaaaggtcttcagctaaaggagttagatcgtggggcagat
attgttgttgccacacctggtaggcttaatgatatacttgaaatgaaaaaaattgacttt
aggcaagtttcactccttgtgcttgatgaggccgaccgaatgcttgatatgggttttgag
cctcaaatccgtaagattgtgaatgagattccaccacgtagacaaactctcatgtacact
gcaacctggccaaaagaagttagaaaaattgccagcgatcttcttgttaatcctgttcag
gttaacattggaaatgtagacgagcttgctgcaaataaatctatcacacagtatgttgaa
gttgtcgcacaaatggagaaacagaggcgtctagagcagatcctcagatctcaggaacgg
ggttctaagatcataatattttgttccacaaaaaagttatgtgatcagcttgcccgtagt
attggccgaacttttggggctgctgcaattcacggtgacaagtctcaaggtgagagagac
tgggttttaggtcagttccggactgggaaatctccaattttggttgccactgatgttgct
gctcgtggtcttgatattaaggatataagggtggtgatcaactatgatttccccaatggt
gttgaggactatgtacaccgaattggtagaactggaagggcaggtgctactggagtggca
tatacctttttctctgagcaggattggaaacatgcaggtgatttgatcaaagttttggag
ggtgctaaccagcatgtgcttccagagttaagacagattgcttcacgtgggccaccaagc
tttggaaaggataggggcgggatgagtcgttttgactctggtagtggtggtggtgggcgc
tgggagagtggtggtcgtggaaatacgagggacagtggatttggtggtcgtggaggcatg
agggatggtggtggctttggtggtcgtgggggcatgagggatggtggtggctttggggct
cgcggtggaatgagggatgcagctggtggacaaggtggtagaggtgatttctttcctggt
agagggggcaacaggggtagaggatttggtgctccacgtgggggcagtgttggttggggt
ggcaggggtgaccgcggtggtcctagtgatcggtacatggatggtcgtggacaaggacgt
ggacggggaagattcgacaacagaagagatgttccgagaagtagagacagaagttacagt
cgtagccctgatagagttcgaacgtgggatattaacagaagcagcagcaggagtagaagt
agaagtaggagtaggagctatagccgtagtcgtagtccacgtcgcagctggtctcgaggt
cgcagtcgcagctatagccgtagtcggagtccacgtcggagtcgtagccgtggtcgtagt
tatagccgcagccgcagccccaaacctacaaggcgtgttaagtcaaaattttctgataag
attgatattgtggcacctgaagcaggagcttctgatcctatacctggcaacacagaaggg
aattctattttggggacagaacatgtggagcagctacctgttgtggggaacactggccca
aataatccagaggctgtagtggacgttagtcatcaaccaccttctgatatttga
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