Trifolium pratense (red clover): 123888153
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Entry
123888153 CDS
T08949
Name
(RefSeq) nuclear cap-binding protein subunit 1
KO
K12882
nuclear cap-binding protein subunit 1
Organism
tpra
Trifolium pratense (red clover)
Pathway
tpra03013
Nucleocytoplasmic transport
tpra03015
mRNA surveillance pathway
tpra03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
tpra00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
123888153
09122 Translation
03013 Nucleocytoplasmic transport
123888153
03015 mRNA surveillance pathway
123888153
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tpra03019
]
123888153
03041 Spliceosome [BR:
tpra03041
]
123888153
Messenger RNA biogenesis [BR:
tpra03019
]
Eukaryotic type
mRNA processing factors
5' end processing
Cap binding complex
123888153
Spliceosome [BR:
tpra03041
]
Common components
Common spliceosomal components
Cap binding complex
123888153
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MIF4G_like
MIF4G_like_2
MIF4G
DUF4407
ApoLp-III
Motif
Other DBs
NCBI-GeneID:
123888153
NCBI-ProteinID:
XP_045793074
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All DBs
Position
LG6:complement(9449947..9466617)
Genome browser
AA seq
866 aa
AA seq
DB search
MSSSSWRTLLLRIGDKSPEYGPSSDFKDHIETCFGVLRRELEHSETEILEFLLTCAEQLP
HKIPFYGTLIGLINLENEDFVKKLVDKTQSKFQDALDTGNCNGIRILLRLMTVMMCSKAL
QPSSLVDVFETFLSSAATTVDEEKGNPLWQPCADFYIACILSCLPWGGAELVEQIPEDIE
RVMVGIEAYLSIRKHTSDNGLSFFENVDEIERDLNNKDFLEDLWDRVQVLSSNGWKVESV
PRPHLSFEAQLVAGKSHEFGTINCSNLPTMSSVPSDVSFGKEKHEAELKYPQRIRRLNIF
PSSKMEDMQPIDRFVVEEYLLDVLFYFNGSRKECASFMVGLPVTFRYEYLMAETIFSQLL
MLPQPPFKPVYYTLVIIDLCKALPGAFPAVVAGAVRALFEKIADLDMECRTRLILWFSHH
LSNFQFIWPWEEWAYVLDLPRWAPQRVFVQEVLEREVRLSYWDKVKQSIENAPGLEELLP
PKGGPNFNLGAENGKENNEQLLSGQLNEMVKGKAPVREIISWIEESVFPNNSLEVTLRVV
VQTLLNIGSKSFTHLITVLERYGQVISKICPDEDKQIMLIAEVGSFWKSNTQMTAIAIDR
MMGYRLVSNLAIVRWVFSEKNVEQFHMSDRPWEVLRNAVSKTYNRISDLRKEILSLKRNI
SSAEVAVNEAKAEVDAAASKLALVDGEPVIGENPAMLNRLKSHAEKAQEELVSIQESVEA
KEALLGRATDENEALFLLLFKSFSNVLTDRLPKGSGARSLREWKSAQVEDMAVDPEEPST
MELDNENQIPQNSQSNGGKKNVAYNVGEKEQWCITTLSYVKAFSRQYASEIWAHIEKLDA
EVLTEDAPPLFRSAVGFGLRRPVNEA
NT seq
2601 nt
NT seq
+upstream
nt +downstream
nt
atgagtagtagtagttggagaactcttcttctacggatcggcgataagagtcccgaatat
ggaccttcttccgatttcaaagaccacattgaaacttgtttcggtgttcttcgccgtgag
cttgaacactccgaaactgagattttggagttccttcttacatgtgctgaacaattgcct
cacaagattcctttctatggaacactgattggcttgattaacttggaaaacgaggacttt
gtgaaaaaactggtggataaaactcaatctaaatttcaggatgccttagatactggaaac
tgcaacggaattcgtattttattgaggctgatgactgttatgatgtgcagtaaagctctt
caaccaagctctctagtggatgtctttgaaacatttttatcatcagctgccacaacagtt
gacgaggaaaaagggaatcctttatggcagccatgtgctgacttttacatagcttgcatt
ttatcatgcctcccatggggtggggctgaacttgttgagcaaattcccgaagatattgag
agagtaatggttggtatagaagcttacttgagcatccgaaagcatacttctgacaatggt
ttatccttttttgagaatgttgatgaaattgagagagatcttaataacaaggattttttg
gaggacttatgggatagagtacaagttttatcaagcaatggatggaaagttgaaagtgtt
ccaagacctcatctttcctttgaagctcagctggttgctgggaagtcccatgaatttggg
acaataaactgctccaacttaccaaccatgtcgtcagttccttccgatgtatcatttggt
aaagagaagcatgaggcagaattaaagtatcctcaaagaatacggcggctaaatatattt
ccttcaagtaaaatggaggatatgcagcctatagatcgatttgtggtggaagagtatctc
ttagatgtgcttttttatttcaatggcagtcgaaaggaatgtgcttctttcatggttggc
ctgccggttaccttcagatatgagtacctcatggctgagacaatattctctcagctgctt
atgcttccgcaaccacctttcaaaccagtgtattacacactggttattattgacctttgt
aaggctcttcctggagcttttcctgcagttgttgctggagcagttcgtgctctctttgaa
aagattgctgatttggatatggagtgccgaacacgactaatcctttggttctcacaccat
ttatcaaactttcagttcatatggccttgggaagagtgggcttatgtgttagatctccct
aggtgggctcctcaacgtgtctttgttcaggaggttttggagagggaagttcgcttgtca
tactgggacaaagtcaagcagagcattgaaaatgcacctggtttagaagaattgcttcct
ccgaagggtggaccaaatttcaatcttggtgcagaaaatggtaaagaaaacaatgaacag
ctgttgtctggacagctcaacgaaatggttaaagggaaggcacctgtccgtgaaataatc
tcgtggattgaagaaagcgtgtttccaaataatagtctagaagttacactcagagttgtc
gtacagactcttctcaacattggatccaagagtttcactcatttgataactgtattagaa
agatatgggcaagtaatttcaaaaatatgtcctgacgaggataagcaaattatgctgatt
gctgaagtcggttctttctggaagagtaacacccaaatgacagcaatagcaattgaccga
atgatgggttatcgacttgtatcaaatctggctattgtgagatgggtcttctcagaaaaa
aatgtcgagcaatttcacatgtcagatcgtccatgggaggtccttagaaatgcagtaagc
aaaacatacaaccgaatttctgatctaaggaaagaaatattatctcttaaaaggaatatt
tcttcagctgaagtagctgtcaatgaggcaaaagcagaggtagatgctgcagcgtcaaaa
ctagcacttgtggatggtgaaccagttattggtgaaaatcctgcaatgttgaatagattg
aaatcacatgctgaaaaagcacaggaggagctggtatctattcaagaatctgtagaagct
aaggaagctcttcttggccgagcaactgatgaaaatgaggcattgtttctcttgttgttc
aaaagcttctcaaatgtattgactgatcgccttcccaagggatctggagctagatcactt
cgtgaatggaagtctgcacaagttgaagatatggcagttgacccggaagaaccgtcaaca
atggaattagacaatgagaatcagatacctcaaaacagtcagtcaaatggtgggaagaaa
aatgttgcttataatgtaggtgaaaaggagcaatggtgtatcactactttgagttatgtg
aaggccttttctaggcagtacgcttctgagatatgggcccatattgaaaagttggatgca
gaggtattaacagaggatgcacctcccctttttcggtcagctgttggttttggtcttcga
agaccagttaatgaggcttga
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