Trifolium pratense (red clover): 123888348
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Entry
123888348 CDS
T08949
Name
(RefSeq) polygalacturonase-like
KO
K01184
polygalacturonase [EC:
3.2.1.15
]
Organism
tpra
Trifolium pratense (red clover)
Pathway
tpra00040
Pentose and glucuronate interconversions
tpra01100
Metabolic pathways
Module
tpra_M00081
Pectin degradation
Brite
KEGG Orthology (KO) [BR:
tpra00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
123888348
Enzymes [BR:
tpra01000
]
3. Hydrolases
3.2 Glycosylases
3.2.1 Glycosidases, i.e. enzymes that hydrolyse O- and S-glycosyl compounds
3.2.1.15 endo-polygalacturonase
123888348
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GFIT
Motif
Pfam:
Glyco_hydro_28
Pect-lyase_RHGA_epim
Motif
Other DBs
NCBI-GeneID:
123888348
NCBI-ProteinID:
XP_045793336
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Position
LG6:complement(16410911..16414588)
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AA seq
444 aa
AA seq
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MALLRHFLISLFTIIIIISFVACNSNLQEDPLITTYVDDSPSNDDADTLLFKNFINQNTN
NILRFDATSRSLEIVNVNDYGAKGNGYTDDTQAFKKAWEVVCSSGEAIFVVPEDNNYLLK
PIRFSGPCKSNITVQISGSLEASDDRSDYSEDQRHWLIFHNVQKLLVNGGGTINGKGSIW
WKNSCKRNKKKPCKDAPTALTFDNCEDLIVENLKIENAQQIHVSFQDSINVKASDLNVSS
PEDSPNTDGIHVTNTQNIKISSSIIGTGDDCISIVHGSKNVEATNITCGPGHGISIGSLG
AGKSKEFVSEVTVNGAKISGTKNGVRIKTWPGGSGSATNIKFLNIEMDNVTNPIIIDQNY
CDKKKKPCKKSDSAVQISNVLYQNIIGKSASDVAVKFDCSEKFPCKEIALENIDLQYDEG
EDAKALCNSVELFYTGHVTPRCYS
NT seq
1335 nt
NT seq
+upstream
nt +downstream
nt
atggctcttctaagacatttcctcatctcattattcactatcatcatcatcatttctttt
gttgcttgtaatagcaacttgcaagaggacccacttattactacatacgttgatgattca
ccttccaatgatgatgctgacacattattattcaagaacttcatcaaccaaaacacaaat
aatattttgagatttgatgccacttcacgttcactagaaattgttaatgtcaatgattat
ggagctaaagggaatggttatactgatgatacacaggcattcaagaaggcttgggaagta
gtatgttcttcaggagaagcaatttttgtggtacctgaagataataattatctactcaaa
ccaatcagattctctggtccatgtaaatctaacataacagtccagatatctggaagtctt
gaagcatcagatgatcgatcagattatagtgaagatcaaagacattggcttatatttcac
aatgttcaaaaactattagttaatggtggtggaaccatcaatggaaaaggaagtatatgg
tggaaaaactcatgtaaaaggaacaaaaagaaaccttgcaaggatgccccaacggctcta
acatttgataattgtgaggacttgatagttgagaatttgaagatagaaaatgcgcaacaa
atccatgtttcattccaagattcgattaacgttaaagcttccgatctcaacgtgtcatca
ccagaggatagtcctaacaccgatggaattcatgtcaccaatacccaaaacatcaaaatc
tctagctctatcataggaactggtgacgattgtatatcaattgtacatggatctaagaat
gtagaagccacaaacataacttgtggaccaggccatggcatcagtattggaagcttgggg
gctggaaaatcaaaagaatttgtttctgaagtaacagtgaatggagctaagatttctgga
actaaaaatggagttagaattaaaacatggccgggaggttcaggaagtgccaccaacata
aaatttctgaacattgaaatggacaatgtgaccaatcccataataatagaccagaattac
tgtgacaagaaaaaaaagccatgcaaaaaatcggactctgctgtccaaattagcaatgtg
ttgtaccagaatataataggtaaaagtgcttctgatgtagctgtgaagtttgattgcagt
gagaaatttccatgtaaggagatagcattggagaacatagacttgcaatatgatgaagga
gaagatgctaaggctttatgcaacagtgttgaattgttttacacaggacatgttacccct
cgctgctactcatag
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