Trifolium pratense (red clover): 123888401
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Entry
123888401 CDS
T08949
Name
(RefSeq) guanine nucleotide exchange factor subunit RIC1-like
KO
K20476
RAB6A-GEF complex partner protein 1
Organism
tpra
Trifolium pratense (red clover)
Brite
KEGG Orthology (KO) [BR:
tpra00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
tpra04131
]
123888401
Membrane trafficking [BR:
tpra04131
]
Endoplasmic reticulum (ER) - Golgi transport
Retrieval pathways
Rab associated proteins
123888401
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RIC1
Beta-prop_EML_2
Beta-prop_TEP1_2nd
Beta-prop_RIG_2nd
Beta-prop_VPS8
Motif
Other DBs
NCBI-GeneID:
123888401
NCBI-ProteinID:
XP_045793411
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All DBs
Position
LG6:complement(17641902..17653282)
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AA seq
1125 aa
AA seq
DB search
MYMTYGWPQVIPLEQGLCPSEQKIVYFKLINRFLLIVSPTHFELWSSSQHRVRLGKYKRD
SDSLQREGENLQAVWSPDAKLIAILTSSSYLHIFKVQFLDKKIHIGGKQPSALCLATISL
LLTEQVPFATKDLSVSNIVSDNRHMLLGLSDGTLYSMSWKGEFYGAFQFDPHPPDSFDDS
HLPHSLENGLSPKGLPKVPMSNHIFPRNSEIKQLELCLPLRLLFVLYSDGQLVSCSISKK
GLKQVDGIKAEKRLACGDAVCASVALEQEILAVGTRRGIVELYDLAESTVLIRSVSLYDW
GYSMEDTGPVSCIAWTPDNSAFAVGWKLRGLTVWSVSGCRLMSTIRQIGLSSVSSPIAKP
NHDCKYEPLMGGTSLMQWDEHGYRLYAIEERSSERILSFSFGKCCLSRGVSSTAFIRQVI
YGEDRLLIVQSEEIDELKMLHLKLPVSYISQNWPVQHVAASQDGMYLAVAGLHGLILYDI
RLKRWRVFGDVTQEQKIQCKGLLWLGKIVVVCNYIDSSNTYELLFYPRYHLDQSSLLCRK
SLLAKPIVMDVYQDYILVTYRPFDVHIFHVKLFGELTPAGNPDLQLSAVRELSIMTAKSH
PAAMRFIPDQLPREPISKNYISSSSDSLTGEPARCLILRSNGELSLLDLDDGRERNLTDS
VELFWVTCGQSEDKTNLIEEVSWLDYGHRGMQVWYPSPGPNSFKQEDFLQLDPELEFDRE
VYPLGLLPNAGVVVGVSQRMSFPSSAEFPCFEPSPQAQTILHCLLRHLLQRDKIEEALRL
AELSAEKPHFSHCLEWLLFTVFEADISRPNVNKNQTSVLKPSKTLLEKTCDLIRNFPEYL
DVVVSVARKTDGRHWADLFSAAGRSTELFEECFQRRWYRTAACYILVIAKLEGPAVSQYC
ALRLLQATLVDSLYELAGELVRFLLRSGREYDQASADSDNSDKMSPRFLGYFLFRSTERK
QALDKSASFKEQSAHVTSVKNILENHASYLMAGKELSKLVAFVKGTQFDLVEYLQRERNG
SARLENFAAGLELISQKLQMETLQSRLDADFLLAHMCSVKFKEWIVVLATLLRRSEVLFD
LFRHDFRLWKAYSSTLQSHPAFIEYQDLLEDLEEKLSSVANEEEK
NT seq
3378 nt
NT seq
+upstream
nt +downstream
nt
atgtatatgacatatggatggcctcaggtcatccctttagagcaaggactgtgtccttct
gaacagaagattgtttatttcaaactcatcaatcgtttcttgttaattgtttcccccact
cactttgaactatggagctcttcccagcatagagtgagattggggaagtacaagagggat
tcagattcattgcagagagaaggagaaaacttgcaggctgtgtggagtcctgatgctaaa
ttaattgctattcttacatcttcttcgtatcttcacattttcaaggtccaattcttggac
aaaaaaatacacattggtgggaaacaaccttcagcgttgtgcctagctactatatctctt
cttctcactgagcaagttcctttcgcaacaaaggatttgtcagtgagcaatattgttagt
gataacaggcacatgctgcttggactttccgatggaactttgtacagtatgtcttggaag
ggggagttttatggagcttttcaatttgatccacatcctcctgatagctttgacgattct
catttaccacattctttagagaatggtctttctcctaaaggcctcccaaaagttcctatg
tccaatcacatatttcccagaaattctgaaatcaaacagctggaactttgccttccattg
aggttgctatttgtcttgtattctgatgggcaacttgtctcatgttccataagtaagaaa
ggtttaaagcaagttgacggtattaaagcagaaaagaggttggcttgtggggatgctgta
tgtgcttcggtagctcttgagcaggaaattcttgctgttggtaccagaagaggaatagtg
gagttgtatgatttggccgaatcaacagtgcttatacgctcggtttctttgtatgactgg
ggatattcaatggaagacactggccctgttagttgcattgcatggacacctgataattct
gcttttgcagttgggtggaaattaagggggcttacagtttggtctgtttctgggtgtcgt
ttgatgtcaacaatccgacaaataggtttaagttctgtatcttctccaattgctaagcca
aaccacgattgtaagtatgagccattgatgggtggtacctcactgatgcagtgggatgaa
cacggatatcgactttatgctatcgaggagagatcttcagagagaattctttcattctct
tttggaaaatgctgtcttagcagaggtgtttctagcactgcattcatccggcaagtgatt
tatggggaagaccggttgctcattgtgcagtcagaagaaattgacgagcttaaaatgctg
catcttaagcttccagtttcttatatttcccaaaactggcctgttcaacatgtggcagct
agtcaagatggaatgtacttagctgttgctggtcttcatggtttgatattgtatgatata
cgactgaaaagatggagagtatttggagatgttacccaggaacaaaagattcagtgtaag
ggcttgctatggctgggaaagattgtcgttgtctgcaactatattgattcttccaacacg
tatgaattgctcttttacccaaggtatcaccttgatcaaagctcattgctttgtcgaaaa
tcattgcttgcgaaaccgatcgtgatggatgtgtaccaagattatatactggttacatat
agaccatttgatgtccatatatttcatgtgaagttatttggtgaattaactcctgcagga
aatccagatttacagctttctgcagtacgagaactttcaattatgactgccaagagccat
cctgcagcaatgcgattcattcccgatcaactcccacgagaacctatttcaaaaaattac
atttcatcttcatcagattcattaacaggagaaccagcaagatgtttgatattgagatca
aatggggagctttcacttcttgatttggatgatgggcgggaaagaaatcttaccgattca
gttgagcttttttgggtcacttgtggccagtctgaggataaaacaaatttgattgaggaa
gtttcatggttagattatggtcatcggggcatgcaggtttggtatccatctccaggtcct
aattcttttaagcaggaggatttcttgcagttggatccggagctggagttcgatcgtgaa
gtatacccattgggacttcttccgaatgctggtgtagttgttggtgtttcccagagaatg
tcatttccatcaagtgcagagttcccatgttttgagccatctcctcaagcgcaaactata
ctgcactgcctactccgccatcttcttcagagggacaaaattgaggaagctttaaggctg
gcagaactatcagcagaaaagcctcatttttcgcattgtctagagtggcttctgtttaca
gtatttgaagcagatatatccaggccaaacgtaaataagaaccagacctcagttcttaaa
ccttcaaaaactcttttggagaagacctgtgatcttatccgaaattttccagagtaccta
gatgttgttgtaagtgttgcaagaaaaacagatggtcgtcattgggcagatttgttctct
gctgctggaagatcaacagagttgtttgaggaatgttttcaacgtagatggtaccgaact
gcagcttgctatatacttgttattgccaaacttgagggtcctgctgtgagtcagtactgt
gctttacggttattacaggcaacactcgttgattctttatatgagcttgctggggagctg
gtgagattcttgttaagatcaggaagggagtatgaccaagcatcagctgattcagataat
tcagataaaatgtctcccagatttttaggctattttctttttcgttctactgagcgcaaa
caagcattggataaaagcgcctcattcaaggaacaaagtgcccatgtcacctcagttaag
aatattttagaaaaccatgctagttacttgatggctgggaaagagctctctaagcttgtt
gcatttgtaaaaggcactcagtttgatttagtggaatatctacaacgcgaaagaaatggc
agtgctaggctggagaatttcgctgcagggcttgaactcataagccaaaagcttcaaatg
gaaacattacagagccgattggatgccgactttctcctggctcatatgtgctctgtcaaa
tttaaggaatggatagttgtcctggctactctcttaagacgctccgaggttctttttgac
ttattccgtcatgattttcggttatggaaagcttacagcagcaccctgcagtcacaccca
gcattcattgaatatcaagatttattggaagacctggaagagaaactttcatctgttgca
aatgaggaagaaaaatga
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