Trifolium pratense (red clover): 123888575
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Entry
123888575 CDS
T08949
Name
(RefSeq) splicing factor 3B subunit 3 isoform X1
KO
K12830
splicing factor 3B subunit 3
Organism
tpra
Trifolium pratense (red clover)
Pathway
tpra03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
tpra00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
123888575
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tpra03021
]
123888575
03041 Spliceosome [BR:
tpra03041
]
123888575
03036 Chromosome and associated proteins [BR:
tpra03036
]
123888575
Transcription machinery [BR:
tpra03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
123888575
Spliceosome [BR:
tpra03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
123888575
Complex B
123888575
Complex C
U2 SnRNP specific factors
123888575
Chromosome and associated proteins [BR:
tpra03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
STAGA complex
123888575
TFTC complex
123888575
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_RSE1_2nd
Beta-prop_RSE1_1st
CPSF_A
Motif
Other DBs
NCBI-GeneID:
123888575
NCBI-ProteinID:
XP_045793604
LinkDB
All DBs
Position
LG6:complement(4917535..4942189)
Genome browser
AA seq
1374 aa
AA seq
DB search
MAVFEEECSSIKSAPSSSSSSSSRYYLSKSVLRPSAVLQVLYAHLRSPSSNDVVFGKETS
IELVVIDEDGNVQTVCDQPVFGIIKDLAVLPWNDKFRARRPQTQGKDLLVALSDSGKLSL
LTFCNEMNRFFPITHVQLSNPGNIRDFPGRMLAVDSSGCFIAASAYEDRLALFSMSTSMI
GSDIIDERIIYPSESEGSASAARTMQKTSISGTIWSMCFISLDSRQPSKEHNPVLAIILN
KRGAVLNELLLLEWNVKAHTISVISQYVEAGPLAHNIAEVPNSPGLAFLFRAGDVLLMDF
RDPHNPLCVSRTCLNILSNVVEEQAYVDDSCKLQDLDDEGFSVAACALLQLSDYDPMCID
SDNGGTNSGPKYICSWSWEPENCEVPRMIFSVDTGEFFMIEVFLDSDGPKFSLSECLYKG
VPCKELLWVKGGYLASIVEMGDSVVLKLKDGRLFSTNLIQNIAPIFDVASGDYHEEKNDQ
MYACCGVTPEGSLRIIRSGINVEKLHRTPSTYEGVAGTWTVRMKISDSFHSFLVLSFLGE
TRILSVGLSFTDVTDSVGFQPNVCTLACGLVSDGLLVQIYQSTVKLCLPTKDGHSEGIPL
SSPICTSWSPENLNISLGAVGHNFIVVSTSNPCFLFILGVRMLSAYQYEIYEMQHLELQN
ELSCISIPRQKYGKKQSNSSISENNSSIASSVSAVDINKTFVIGTHRPSVEIWSFDPDGG
VTVVACGTISLKSTMGIAKSFCIPQDVRLVFVDKYYVLAGLRNGMLLRFEWPTEPSHSSS
INVVDTALSSINLVNSMTMAFNMRNNHPCLLQLIAIRRIGITPVFLVPLDDTLDADIIAL
SDRPWLLHSARHSISYTSISFQPSSHVTPVCSIDCPKGILFVAENSLHLVEMVYSKRLNM
KKINLMGTPRKVLYHKESRMLLVMRTELSIGACLSDICCVDPLSGSVLSSFRLELGETAT
SMELIRFGSEQVLVVGTSLYSGPPVIPSGEAESAKGRLLVLCIDHVQNSDSGSMTFCSKA
GSSSQKTSQFNEIVGHVPEQLSSSSLGSSLGSSPDDNSSDGIKLDENEIWQFRLVSATTW
PGIVHAICPYLDRYFLASAGNAFYVCGFPNDTPQKVKKYAVARTRFAIRSLTAYFSRIAV
GDNRDGILFFSYHEEARKLEQFCGDRSIRLVADCILMDDNTAIVSDRKGGIAVLSSDHLE
ASSNASTECNLRLSCAYFMAEVAMSIQKGSYSYRLPADDVLSGGIGPKTNVDSLQNTIIV
STLLGSIMIFIPLSREEYELLEAVQARLAVHHLTAPVLGNDHNEFRSRENPVGAPKILDG
DMLTQFLELTNMQQNNILYSEPPDVVKPSLKLLLPQFSVNQVVQLLERVHYALN
NT seq
4125 nt
NT seq
+upstream
nt +downstream
nt
atggcggttttcgaagaagaatgttcttctatcaagtcagctccttcttcatcatcatct
tcttcttctcgctattatctctccaagtccgttctcagacctagcgctgttctccaggtc
ctctacgctcatcttcgttccccttcctcaaacgacgtcgttttcggcaaggaaacatct
atagagttggtggtcattgatgaggatgggaatgtacaaactgtttgtgatcagcctgtt
tttggtatcattaaagatcttgctgtattgccctggaatgacaaatttcgtgcccgtcgt
ccacagactcaaggtaaagacctcttggttgctttgtctgattccggaaagttgtcattg
ctcacattttgcaatgaaatgaacaggttttttccaataacacacgttcagctatctaat
cctggaaacataagggattttccaggaagaatgctggcagttgattccagtggttgtttt
attgctgcaagtgcatatgaagatcggctggctttgttttctatgtcaacgtcaatgatt
gggagtgatatcatcgatgagagaataatatatccctctgaaagtgaagggagtgcaagt
gctgccagaaccatgcagaaaaccagtataagtggtactatttggagtatgtgctttatt
tcactagattcccgacaaccaagcaaggagcataatcctgtattagctattattctaaat
aagaggggagctgttctaaatgaattgcttttgttggaatggaatgttaaagcacataca
atctctgttatttctcagtatgttgaagccggacctctagcacataacattgctgaagtt
cccaactctccgggacttgcatttctattcagggctggtgatgttctattaatggacttt
agagatcctcacaatccattatgtgtctctaggacttgcttgaacattttatccaatgta
gtagaagagcaggcatatgtggacgactcttgtaaattacaggatcttgatgatgaaggc
tttagtgttgctgcctgtgctttgttgcagcttagtgattatgatcctatgtgcatagac
agtgataatggtggaactaattctggtcccaagtacatatgctcttggagttgggaacct
gaaaattgtgaagttcctaggatgatttttagtgtagacactggagaattttttatgatt
gaagtttttttggactccgatggccctaaattcagcctctccgagtgtctctataaaggt
gtaccgtgtaaagaacttttgtgggttaagggtggatatctagcatcaattgtagaaatg
ggggacagcgtggtcctgaaattgaaagatggaaggctgttttctacaaatcttattcaa
aacattgcaccaatattcgatgtggcatctggggattatcatgaagagaagaatgaccaa
atgtatgcttgctgtggtgtgacacctgaggggtcattaaggattattcgaagtggaatc
aatgtagaaaagctacatagaaccccttctacttatgaaggggtagctggtacttggact
gttcgaatgaaaatttcagattcatttcattcttttctagttctatcatttcttggggag
accagaatattgtcagttggattaagttttacggatgtgactgattctgttggtttccaa
cctaatgtctgtactttggcatgtggccttgtaagtgacggtttgcttgttcagatctac
caatctactgttaagctttgtttgcctactaaggatggtcattctgaaggtatccctctg
tcctctcctatttgcacatcttggtccccagaaaatctgaatattagtttaggggcagtt
ggccataatttcatagttgtgtcaacctctaacccatgttttttgtttatccttggggtt
agaatgctttcagcttatcaatatgaaatatatgaaatgcaacatttggaactgcagaac
gaattatcatgcatttccatccctagacaaaagtatgggaaaaaacaatcaaattcatcc
atttcagaaaataatagttccattgcttcttctgtaagtgccgtggacatcaataaaaca
tttgttattggcacccataggccttctgtggaaatttggtcttttgatccggatggtgga
gtcacagtagttgcttgcggaacaatttcattaaaaagtacaatggggattgctaaaagt
ttttgcatacctcaagatgtacgactcgtatttgttgataagtattatgttcttgctgga
ttgaggaatggaatgctccttcgctttgagtggccaacagaaccgtctcattcatcatca
ataaatgtggtggacactgctttatcctctataaatttggtaaattcaatgaccatggct
ttcaacatgagaaataaccatccttgcctgcttcaattgattgccattcgtcgcattggc
atcactccagttttcttggtgcccctggatgacacacttgatgctgatataattgcactg
agtgataggccttggttattgcatagtgcaagacacagcatttcctatacttctatctca
tttcaaccatcttcacatgtaactcctgtttgctctattgactgtccaaaaggaatatta
tttgttgccgaaaacagtttgcatctggtggagatggtctacagcaagagacttaatatg
aagaagattaatttaatgggcactccacgaaaggtcctttatcataaagaaagtcggatg
ttacttgtgatgaggactgaactgagtattggtgcatgtttgtctgacatatgttgtgtg
gatcccctaagcgggtcagtactatcatcttttagactagaacttggagaaacagcaaca
tccatggaattaattaggtttggaagtgagcaggtgcttgtggttggaactagtctgtat
tctggtccacctgtaatccccagtggtgaagctgagagtgccaagggccggcttcttgtt
ctttgcattgatcacgtgcaaaattcagatagtggttccatgaccttctgttcgaaagca
gggtcatcatctcaaaaaacttcacagttcaatgaaattgttgggcatgttcctgaacag
ctatcaagcagtagccttggtagcagccttggcagcagccctgatgataatagctctgat
ggcatcaaacttgatgaaaatgaaatttggcagttccgattagtttctgcaactacatgg
ccgggaattgtacatgcgatctgtccttatcttgatcgctattttttggcatctgctggc
aatgctttctatgtatgtggtttcccaaatgacactccacaaaaagtgaaaaagtatgct
gtggcaaggacgcgtttcgcgataagatctttgactgcatattttagtagaattgcagtt
ggtgataatcgtgatggtatccttttcttttcttaccatgaggaagcaagaaaattggag
caattttgtggtgaccgatcaataaggttggttgctgattgcattctcatggatgataat
acagctattgtttcagatcgtaaaggaggcatagctgttttaagttcagatcatttggaa
gcatcaagcaatgcaagtactgaatgtaatttgagactaagctgtgcttatttcatggct
gaggtagctatgagcatccaaaagggctcatattcatacagacttccagctgatgatgtg
ttgtcaggtggcattggccccaagacaaatgttgactcgctacaaaatactattattgtt
agtacactgttaggaagcataatgatcttcatccctttatcaagagaggaatatgagctc
ttagaagctgtgcaagcaagacttgctgtccatcatttgactgcacctgttcttggaaat
gatcacaatgagtttcgcagccgggaaaatccagttggggcacccaagatacttgacggg
gatatgttgactcagtttctggagctgacaaatatgcagcaaaataacattttgtattcg
gaaccacctgacgtggtaaaaccaagtttgaagctactcctaccccaattttctgtcaat
caagttgttcagcttctcgaacgagttcattatgcactgaactaa
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integrated database retrieval system
