KEGG   Trifolium pratense (red clover): 123888750
Entry
123888750         CDS       T08949                                 
Name
(RefSeq) UBP1-associated protein 2A
  KO
K12741  heterogeneous nuclear ribonucleoprotein A1/A3
Organism
tpra  Trifolium pratense (red clover)
Pathway
tpra03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:tpra00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    123888750
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:tpra03019]
    123888750
   03041 Spliceosome [BR:tpra03041]
    123888750
Messenger RNA biogenesis [BR:tpra03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    Other transport factors
     123888750
   mRNA cycle factors
    Common to processing body (P body) and stress granule
     123888750
Spliceosome [BR:tpra03041]
 Common components
  Common spliceosomal components
   hnRNP proteins
    123888750
SSDB
Motif
Pfam: RRM_1 RRM_7 YL1 RPA43_OB
Other DBs
NCBI-GeneID: 123888750
NCBI-ProteinID: XP_045793863
LinkDB
Position
LG6:complement(13409119..13412658)
AA seq 487 aa
MVRKRKLVTKSSQPEEPPLKQHQPEPEPVPEPEPEPEPYIPTDEYEEVEEEVEYEEVEEE
EEVEEEEEEEEQEEEEIQGGGEYQDEDDEPIQKLIEPFTKEQIASLLCEAASKHRDVADR
IRKIADGDASHRKIFVHGLGWDTTSATLINAFSQYGEIEDCKAVTDKVSGKSKGYGFILF
KRRSGARNALKEPQKKIGNRMTACQLASIGPVQQTPQPVPQLVPQGSEYTQRKIYVSNVG
PDLDGSKLFGFFSRFGEIEEGPLGLDKVTGKPKGFCLFVYKSAESARRALEEPHKEFEGH
ILHCQRAIDGPKVVKTQQHQQSLPQQHVNPLNQLNPLTQRTQYQRNDNVGYVGGSSLAVS
QPGGHLMAPTGPAAGYNQAAASGLNPVLTPALGQALTALLASQGATLGLSNLLGSLGTSS
GVNPGIPAAGHGVQNGYGAQPTISSSVMGAYGNTLPQAGLLQYPNQQIGQGGSGRGQYGG
AAPYTGH
NT seq 1464 nt   +upstreamnt  +downstreamnt
atggtgagaaagagaaagctcgtaactaaatcttctcaaccagaggaacctccactcaag
caacatcaaccggaacccgaaccggttcccgaaccagaacctgaaccggagccatacatc
cctaccgacgaatacgaagaagttgaagaagaagttgaatacgaagaagtagaggaagaa
gaagaagtagaagaagaggaagaagaagaagaacaagaagaagaagaaattcaaggtggt
ggagagtatcaagacgaagacgatgaaccgattcagaagcttatagaacctttcacaaaa
gaacagatcgcgagtcttctttgtgaagctgcttctaagcatcgtgatgttgctgatcgg
atcaggaaaattgctgatggagatgcgtcgcatcggaaaatctttgttcatggtttggga
tgggatacaacttcagcaaccctaattaatgctttttcacagtacggtgaaattgaggat
tgtaaagcggttactgataaggtttctggcaaatctaagggttatggatttattctcttt
aagagaagaagtggtgcaagaaatgcgttgaaggagccacagaagaagattgggaataga
atgacggcgtgccagctggcttctattggtcctgtgcagcaaactccgcagccagtgcca
cagttggttccgcaaggctcggagtatacacagaggaagatttatgttagtaatgttggt
cctgatctggatgggtcgaagctgtttggttttttctcgaggtttggagagattgaggaa
gggcctttagggcttgataaggtgactggaaagccgaaagggttttgtttgtttgtttat
aagagtgctgagagtgcgaggagggcgttggaggagcctcataaggaatttgagggacat
attttgcattgtcagagggcaattgatggtcctaaggttgtgaagacacaacaacatcag
cagtcgttgccgcagcaacatgtgaatccattgaatcaattgaatccattgactcagagg
acacaatatcagagaaatgacaatgttggatatgttggtggtagtagtcttgcagttagc
caaccaggagggcatttaatggcaccaacaggaccagcagccgggtacaatcaggcggct
gcctctgggctgaacccggtgctaactcctgctcttggacaggcgttgacggcactgctt
gcgtctcagggtgctactttggggctgtctaatttgttagggagtcttggaacaagtagt
ggggttaatccaggtattcctgctgcgggacatggagttcagaatggatacggtgctcag
cctactataagttcatcagttatgggagcatatgggaatacattgccacaggctgggttg
ctgcaatacccgaaccagcagattggacaaggtggttctggaagaggccaatatggtggt
gctgcaccttacacggggcactag

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