Trifolium pratense (red clover): 123888905
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Entry
123888905 CDS
T08949
Name
(RefSeq) protein TRANSPORT INHIBITOR RESPONSE 1
KO
K14485
transport inhibitor response 1
Organism
tpra
Trifolium pratense (red clover)
Pathway
tpra04075
Plant hormone signal transduction
Brite
KEGG Orthology (KO) [BR:
tpra00001
]
09130 Environmental Information Processing
09132 Signal transduction
04075 Plant hormone signal transduction
123888905
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
tpra04121
]
123888905
Ubiquitin system [BR:
tpra04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
SCF complex
Target recognizing subunit (F-box)
123888905
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GFIT
Motif
Pfam:
Transp_inhibit
LRR_SKP2
F-box_5
LRR_At5g56370
LRR_FBXL15
F-box-like
F-box
LRR_NXF1-5
LRR_14
LRR_6
Motif
Other DBs
NCBI-GeneID:
123888905
NCBI-ProteinID:
XP_045794023
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Position
LG6:complement(4700682..4704144)
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AA seq
595 aa
AA seq
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MDHSFPQKVLEHLFSFIDSNKDRNAISLVSKSWYEIERRSRKKIFIGNCYAVSPTTVIKR
FPELRSITLKGKPHFADFNLVPDGWGGYVYTWIEAMAVSVPLLEEIRLKRMVVTDESLEL
IAKSFKNFKVLVFISCDGFSTDGLEAIASNCRNLKELNLQESEVEDLSGDWLCYFPDSYT
SLVSLNISCLNNEVNLSALEALLGRCPNLQTLCLNHAVPLDKLPSLLSQCPQLVELGTGV
YSTEEMHPDVLSSLITAFSGCKQLKSLSGFWNVLPSYLPALYPICSRLTSLNLSYAIIQS
SDIVKLIGQCPNLLRLWVLDYIEDVGLEAVAASCKDLQELRVFPSDPSCLELNNALTERG
LVSVSKGCPKLQSVLYFCRQMSNAALSAIAQIRPNLTRFRLCILEPHTPDYLTLQPLDSG
FGAIVEHCKDLQRLSLSGLLTDRVFEYIGTHAKKLEMLSVAFAGDSDLGLHYVLSGCENL
RKLEIRDCPFGDEALLANAAKLETMRSLWMSSCSVSYGACKLLGQKMPKLNVEVIDESGP
PDSRPDSCPVEKLYIYRSIAGPRLDMPGFVWTMGDDSSRKLELDVAGVEAQFRNL
NT seq
1788 nt
NT seq
+upstream
nt +downstream
nt
atggatcactcattccctcagaaagttctagaacacctattttcattcattgattccaac
aaagaccgaaacgcaatctctctagtatccaaatcatggtacgagatcgaacggcgaagc
aggaagaaaatcttcatcggaaactgctacgccgttagtcctacaacagtgatcaaacga
ttcccggagttaagatccattacgttgaaagggaagccacacttcgccgacttcaattta
gtacccgacggttggggcggttacgtctatacttggattgaagccatggctgttagcgtt
cctttgcttgaagagattcgattgaagaggatggttgtaacagatgagagcttggagctt
atagctaaatcgttcaagaatttcaaagtgttggtttttatttcgtgtgatggtttttct
actgatggacttgaagccattgcttccaattgcaggaatttgaaggagttgaacttgcag
gagagtgaagtggaggaccttagtggggattggctatgctatttccctgattcctacaca
tcattagtttcacttaatatctcttgcttgaacaatgaggtgaatttgtctgcactagag
gccctgcttggtaggtgtcccaacctccagactctctgtctcaatcatgctgtgcccctt
gataaacttcccagcttacttagccaatgtcctcagctggttgagttaggcacaggagtc
tactcaaccgaggagatgcatccagacgtcttgtcaagcctaataacagcattttctggg
tgcaagcaattgaagagcttgtctggcttttggaatgtcctgccatcctaccttccggca
ttatacccgatatgctctaggctaacatcactaaacctgagttatgctatcattcaaagc
tctgatattgtcaaacttatcggtcaatgccccaatttgttgcggttatgggtgcttgat
tacatagaagatgttggtcttgaagctgttgctgcttcatgcaaggatctacaagagttg
agggtgtttccatctgacccatcttgcttagaactaaataatgcattgacagaaaggggt
ctcgtctctgtatctaaaggctgcccaaagctccagtcagttctatacttttgtcgacaa
atgtcgaatgctgctcttagtgctattgcacagattaggcctaatttgacccgttttcgc
ctatgtattcttgagcctcatactcctgactatcttacccttcaaccactggattctggt
tttggagctattgttgagcattgcaaggaccttcagcgcctttccctttctggtcttctt
acagatcgtgtttttgagtatattggaactcatgcgaagaagctggaaatgctatctgtt
gcttttgctggagatagcgatttgggtctccattatgtgctgtctgggtgtgagaatctt
aggaagctagagattagggactgcccctttggtgacgaggcccttttggccaatgctgca
aaactagagacaatgcggtccctttggatgtcctcttgctcagtgagttatggagcgtgt
aagttacttggtcagaaaatgcccaaacttaacgttgaagtcattgatgaaagtgggcct
ccagattcaagacctgatagttgtcctgttgagaagctttatatatacaggagtattgcc
gggccaagattggacatgcctggttttgtctggacaatgggggatgattcttcacgaaag
ctcgagcttgacgtggcaggagtagaagctcagtttagaaatctctga
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