Trifolium pratense (red clover): 123888921
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Entry
123888921 CDS
T08949
Name
(RefSeq) uncharacterized protein LOC123888921
KO
K07573
exosome complex component CSL4
Organism
tpra
Trifolium pratense (red clover)
Pathway
tpra03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tpra00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
123888921
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tpra03019
]
123888921
Messenger RNA biogenesis [BR:
tpra03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
123888921
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
123888921
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ammonium_transp
EXOSC1
ECR1_N
RRP4_S1
DUF3082
ECR1_N_2
Motif
Other DBs
NCBI-GeneID:
123888921
NCBI-ProteinID:
XP_045794043
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All DBs
Position
LG1:14905905..14922671
Genome browser
AA seq
1021 aa
AA seq
DB search
MEAAVAQMVTPGEVLGKTDDVKAGRGTYAAVHNNTVYASLTGFRHTIPPASDSPDQRPTI
EVTGHKAHGPVPEPGSVVIARVTKVMAKTASLDIMCVGQKSVREKFTGMIRQQDVRATEI
DKVDMHLSFRPGDIVKALVLSLGNARAYFLSTAKNELGVVSAESTAGATLVPISWTEMQC
PLSGQIEQRKVAKVASLSMASLHLLPSLSKSLSSISPLSQYHTHPFASTTSLRFAHTITY
TNTRFPTKPLSLRFALTESNTPNSTQPDPKTLLQEIADSFDLPVDYFAQFPSDLRLDLND
AAFDLSNGPILDECGKELGEILLNLSRAWELADTSTSRSLAAKLPLIEANLTGTAKSALG
RRLVSAGRRFQSMGQYGQGETQKIAKAMIAAGKALSASSTSAIIDKEPKEENRTLKFGAL
QVEITPTKANIGAAIAFVFGILTWEIAQGLQNTPESSLQYANDNALLLAKSLRGTLLALF
YGSTLLSALTSGGLVLLGIQHSSDMASSSCSATDLTPLLTAAANATAVANYLCTQFDAIS
KKFSDTTYAIDNTYLLFSAYLVFAMQLGFAMLCAGSVRAKNTMNIMLTNVLDAAAGGLSY
YLFGFAFAFGAPSNGFIGRHFFGLRDYPSPAGDYSFFLYQWAFAIAAAGITSGSIAERTQ
FVAYLIYSSFLTGFVYPIVSHWVWSADGWASPTRTDGDVLFGSGVIDFAGSGVVHMVGGI
AGLWGAFIEGPRIGRFDRTGRVVALKGHSASLVVLGSFLLWFGWYGFNPGSFLTIVKGYG
NNKGDYYGQWSAIGRTAVTTTLAGCTAALTTLFSKRLLVGHWNVTDVCNGLLGGFAAITS
GCSVVEPWAAIVCGFIAAWVLIGLNKLAVKVKYDDPLEAAQLHGGCGAWGVLFTGLFAKA
EYVDEIYGIGRPYGLLMGGGGKLFAAQVIEVLVVCVWVTVTMAPLFYGLNKMKLLRISRD
DETAGMDLTRHGGFAYAYHDEDDDESIRKLGFMMGRIEPAGSVTPSATGHDSQMPTTTPP
V
NT seq
3066 nt
NT seq
+upstream
nt +downstream
nt
atggaagcagcagtggcacagatggtaacgccgggagaagtattaggcaaaaccgacgac
gttaaagccggaagaggaacatacgcggcggttcacaacaacaccgtttacgcctcctta
actggtttccgccacaccatacctcctgcttcggactcacctgaccagagacctactatt
gaagtaactggtcataaagctcatggacctgttcctgaacctggatctgttgtcattgct
agggttactaaagttatggctaaaactgcctcactagatattatgtgtgttggacaaaaa
tctgttcgcgaaaaattcaccggcatgattaggcagcaagatgttagggcaactgagatt
gataaagtagatatgcatctatcttttcgtcctggtgacattgttaaagctcttgtgctt
tctcttggaaatgcacgggcgtactttctgtcaactgcaaagaatgagcttggtgttgtt
tctgcagaaagcactgctggtgcaactttggttccaataagttggacggagatgcaatgt
ccactatctggtcaaattgaacaaagaaaggttgcaaaggttgcaagcctttcaatggct
tctcttcatcttcttccttctctctccaaatccttgtcttcaatatcccctctttcccaa
tatcacactcatccattcgcttccacaacctcactcagattcgcccataccatcacttat
accaatacccgttttcctaccaaacctctttctctgcgttttgctctaacagagtctaac
acccctaattctacacaacctgaccccaaaactcttctccaagaaattgccgacagtttt
gatcttcctgttgattactttgcgcagtttccaagtgatcttcgattagatctgaatgac
gctgcgttcgacctttcaaatggacctatcttggacgagtgtggcaaagagttaggagag
atattgctaaacctctctcgagcatgggagcttgctgatacttccacctcccgctcttta
gcagcaaagcttccattgatagaggctaatttgacaggcactgccaagtcagcacttgga
aggcgtttggtatctgctggaagaaggtttcagtcaatgggacaatatggccaaggtgag
acacaaaagattgcaaaagcaatgattgcggccgggaaagctctatctgctagttcaact
tctgcaataatagataaagaaccgaaagaagaaaataggactctgaagtttggagcattg
caggttgaaattacacctactaaagccaacattggcgctgcaattgcatttgtgtttggg
attcttacatgggagatagctcaaggacttcaaaacactccagagagttctttgcagtat
gcaaatgacaatgctttgttgcttgctaagtctttgaggggaacattgcttgctcttttt
tacggctccacgttgttgtccgcacttacttcaggggggcttgttttacttggtatacag
cactcatctgatatggcttcttcctcttgctccgccacagacctcaccccacttctcacc
gccgccgcaaacgcaactgctgtggcaaactatctctgcacccaatttgatgccatctcc
aaaaagttcagtgataccacctatgcaatagacaacacctaccttctcttctcagcttac
ttagtcttcgctatgcagctcggtttcgccatgctctgcgccggctctgttcgagccaaa
aacaccatgaacatcatgctcaccaatgtccttgatgcagctgccggtggactttcctat
tacctcttcggctttgctttcgcctttggagcaccctccaacggcttcattggacgccac
ttttttggcctaagggattacccttcacccgccggagactacagcttctttctctatcaa
tgggctttcgccatcgccgctgcaggcatcaccagtggctctattgcagagagaacacag
tttgtcgcatatctcatatattcttctttcttaaccggttttgtttatcccatcgtttca
cattgggtttggtccgctgatggatgggccagcccaacgcgaaccgatggtgatgtctta
ttcgggtccggagtaattgactttgccggttcaggcgtggttcacatggttggcggtata
gcaggtttatggggagcatttatagaaggtccaagaatcggccgcttcgaccggaccggt
cgggttgttgcattaaaaggacacagtgcatcgttggtagtgttgggttcatttttatta
tggttcggttggtacgggttcaaccctggttcatttttaacaattgtaaaaggttatggc
aataacaaaggagattattatggtcaatggagtgctatcggaaggacagctgtcacaacg
acattggcgggatgcaccgcagctttaacaacattgtttagtaaacggttattggttgga
cactggaatgtgactgacgtgtgtaacggtttacttggcggttttgctgcgataacttcg
ggctgttctgttgttgaaccatgggctgcgattgtgtgtgggttcattgcagcatgggtt
ttgattggacttaataaactagccgttaaggtgaagtatgatgatcctttagaggcggcg
caattacacggagggtgtggcgcgtggggggtgttgtttacaggattgtttgcgaaagcg
gaatatgttgatgagatttatgggattgggaggccgtatggattgttgatgggtggcgga
ggaaagttgtttgcggcgcaagttattgaggtgttggtggtatgtgtgtgggttacagtg
acgatggcaccattgttttatgggctgaataagatgaaattgttgaggatttcaagggat
gatgaaaccgcgggaatggatttgacgagacatggtggatttgcttatgcatatcatgat
gaagatgatgatgaatcgatcaggaaattagggtttatgatgggtagaattgagccggct
gggagtgtaactccctccgccaccggacatgattcacagatgccaaccactacaccacca
gtgtga
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integrated database retrieval system
