Trifolium pratense (red clover): 123888942
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Entry
123888942 CDS
T08949
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 8-like
KO
K12614
ATP-dependent RNA helicase DDX6/DHH1 [EC:
5.6.2.7
]
Organism
tpra
Trifolium pratense (red clover)
Pathway
tpra03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tpra00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
123888942
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tpra03019
]
123888942
03036 Chromosome and associated proteins [BR:
tpra03036
]
123888942
Enzymes [BR:
tpra01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
123888942
Messenger RNA biogenesis [BR:
tpra03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
123888942
mRNA degradation factors
5'-3' decay
Decapping complex
123888942
Chromosome and associated proteins [BR:
tpra03036
]
Eukaryotic type
Gene silencing
piRNA pathway
123888942
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
CMS1
TFIIA
Motif
Other DBs
NCBI-GeneID:
123888942
NCBI-ProteinID:
XP_045794065
LinkDB
All DBs
Position
LG6:21677565..21683715
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AA seq
505 aa
AA seq
DB search
MNNRGRYPPGIGLGRGGGGGLNSNTGYQQRPQQQQQQYVQRHMVQNQNPQQYQQQNQQNH
QYQQQQQQQQQQQWLRRNQLGGTDTNNVEEVEKTVQSEANDTSSQDWKARLKLPPADTRY
RTEDVTATKGNEFEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGSDILARAKNGTG
KTAAFCIPALEKIDQDNNIIQVVILVPTRELALQTSQVCKELGKHLQIQVMVTTGGTSLK
DDIMRLYQPVHLLVGTPGRILDLAKKGVCVLKDCSMLVMDEADKLLSQEFQPSIEQLIQF
LPSNRQILMFSATFPVTVKDFNDRYLRKPYIINLMDELTLKGITQFYAFVEERQKVHCLN
TLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACR
NLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNL
YRIEQELGTEIKQIPPFIDQAIYCR
NT seq
1518 nt
NT seq
+upstream
nt +downstream
nt
atgaacaacagaggtagatatccacctgggatcgggttagggcgaggtggtggtggtggt
ttgaactcgaacaccgggtatcaacagaggccacaacaacaacaacaacagtatgtgcag
aggcacatggtgcaaaatcagaatccacaacaataccagcagcagaatcaacagaatcat
cagtatcagcaacagcagcagcaacaacaacaacaacagtggctgagaaggaaccagttg
ggtggtactgacaccaacaatgtcgaggaggttgagaagactgtacagtctgaagcaaac
gacactagttcacaagattggaaggcaagactaaagcttccaccagctgatacacgctat
aggacagaggacgtgacagcaactaaaggaaatgagtttgaggattactttttgaagcgt
gagctgctaatgggaatatatgagaaggggtttgaaaggccatccccaatccaagaagaa
agcattccaattgcccttactggtagtgacattcttgctagggctaaaaatggaacaggc
aaaacagctgcgttttgcattcctgcattggaaaaaattgatcaagataataatattatt
caagttgttatactggttccaacacgagaattggctttgcaaacatctcaagtgtgtaaa
gagcttggaaagcatttgcaaattcaagttatggtcacaacaggtggtaccagcttgaaa
gatgacattatgcgtttatatcaacctgttcatctgctagttggtactccaggaagaata
ttggatcttgcaaagaagggtgtctgtgttctgaaagattgttctatgcttgtcatggat
gaggctgataaacttctctcccaggagttccaaccttcaatagaacagctgattcaattt
cttccctcaaaccgtcaaatcctaatgttttcagctacatttcctgttactgtaaaggac
ttcaatgatagatatcttcgtaaaccgtatatcattaaccttatggatgaactaactctg
aagggtattacacaattttatgcatttgtggaggagaggcagaaggtccactgcctaaat
actcttttctctaagctgcaaataaaccagtcaatcatcttctgcaattctgtgaaccgg
gttgaactccttgccaagaaaatcacagaactagggtattcatgtttctatatccatgct
aagatgttgcaagaccaccgtaatagagtttttcacgacttccgcaatggtgcctgcagg
aatcttgtttgtaccgatcttttcactaggggaatagatatccaagcagtgaatgttgtt
attaattttgattttcccaagaactcagaaacatatctgcacagggttggtcgatcaggg
aggtttggacaccttggtttagcagtgaacttgataacctatgaggatcgcttcaatttg
tataggattgagcaagaactcggcactgaaataaaacaaattcctcccttcattgatcag
gcaatatattgtcggtga
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