Trifolium pratense (red clover): 123889566
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Entry
123889566 CDS
T08949
Name
(RefSeq) UV-stimulated scaffold protein A homolog isoform X1
KO
K23720
UV-stimulated scaffold protein A
Organism
tpra
Trifolium pratense (red clover)
Pathway
tpra03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
tpra00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
123889566
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tpra03400
]
123889566
DNA repair and recombination proteins [BR:
tpra03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
Other TCR factor
123889566
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
UVSSA_N
DUF2043
VHS
V-ATPase_H_C
Motif
Other DBs
NCBI-GeneID:
123889566
NCBI-ProteinID:
XP_045794912
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Position
LG6:564183..566989
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AA seq
643 aa
AA seq
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MEEEEKQQHGKGSKVRSLIEMATNSTAPDVDPRLLKAIKTVVRYSDSELRLASQTLMDLM
KRDHSQVRYLALQIIDEIFMRSKLFRTLIVENMEQLMSLSVGFRRNSPLPAPPSVASVLR
SKAIEFLEKWNVSFGVHYRQLRLGYDYLKNTLRLQFPNIQANVERIQQERRERERRSKEI
LLNKYESLKEKLPSIKGEILSTMGEIDGCLDILHSKQEHESDDILDDEELDDFRSLELQQ
LRREALNEGEKVYESSENKVVFDALRELYKLLVTKHLVSIQEWVSVLVRVEVVDNRFRDS
TLKEFIDIQNRLKSVKKRCEEAGCSILSTRDGEEDFWEEGDVLFVETSSSAPDNQNKHTD
MASTSHNTSSDNLGSYATESKSSKTSHNTSSDNLGSYATESKSSKTDSLHHGGNESESNP
LRSKLLTNAPVVSWGSHLDTWGSNRVFMANQRGLDLDSHWGRVDDDAVIPSDKIAELSVP
AMPYEEKQIEIQPCHAPLRKGGLCRRRDMKICPFHGPIIPRDDEGRPLTTSPSEDVNVNV
KTDLVEKLAKQAVKNVRETDKEAAKKREIDKQALKRAKLAKIREHNEAVLRDAALASTSS
SAAFGEEDEATKRDKKASLASMLRKKVTSKDRIARKLLSSRAR
NT seq
1932 nt
NT seq
+upstream
nt +downstream
nt
atggaggaagaagaaaaacaacaacatggaaaaggaagcaaggttaggtctttgattgaa
atggcaacaaactccaccgcacctgatgttgatccccgcctcctcaaagccattaaaacg
gtggtccgctattccgattccgagctccgactagcttctcaaaccctaatggatctcatg
aagcgtgaccactcccaggttaggtatcttgcacttcaaataattgatgaaatcttcatg
cgttcaaagctttttaggactcttattgttgagaatatggagcaattaatgtccttgagt
gttgggtttcggcgaaattcgccgcttcctgcacctccatcagttgcatctgttttgcgt
tctaaggccattgaatttttagagaagtggaatgtgtcgtttggggttcattacagacag
cttagattaggatatgattatttgaagaatacactcaggcttcagtttcctaacatacaa
gctaatgtggagaggattcagcaagagagaagggagagggagaggaggtcgaaagagatt
ttgttgaacaagtatgaatctttgaaagagaaattgccttcaataaagggagagatactg
tctacgatgggtgagattgatgggtgtttagacattttgcattcaaaacaggagcatgag
tcagatgatatcttagatgatgaagagcttgatgacttccgctctttggagctgcagcaa
cttcgccgtgaagcattgaatgaaggggaaaaagtttacgagagcagcgaaaacaaggta
gtttttgatgcattgagggaactgtacaaacttctggtgacaaagcacttggtttccatc
caagaatgggtttccgtacttgtaagagttgaagtagtcgacaatagatttagagattct
actttgaaggagtttattgatatccaaaatcgtcttaaatcagttaaaaagagatgtgag
gaggcaggttgttctattctatcaacacgtgatggggaagaagatttttgggaggagggt
gatgttctattcgttgaaacttcatctagtgcgcctgataatcaaaacaagcacactgac
atggcatcaacttcccataatacgagcagtgataatcttggttcatacgctacagagtct
aaaagctctaaaacttcccataatacgagcagtgataatcttggttcatacgctacagag
tctaaaagctctaaaactgatagcctacatcatggcggaaatgaatctgagtcaaaccct
ctgaggagtaaacttttgaccaatgctcctgtggtaagttggggttctcacttggatact
tggggttcaaacagggtttttatggccaaccagcggggcttggatcttgatagtcactgg
ggtagggtagatgatgatgcagttattccatcagataaaattgctgaattgagtgttcca
gcaatgccttatgaagaaaagcaaattgagatccaaccatgccatgctcctttgagaaaa
gggggactctgtcggagaagagatatgaaaatttgtccatttcacggacctattattcct
cgagatgatgaagggaggccgcttactacaagtccttcagaagacgtgaatgttaatgta
aagactgatttagtagagaagttagcaaaacaagcagtaaagaatgtccgggaaactgac
aaggaggcggccaagaagagagaaattgataaacaagcattgaaacgtgcaaaacttgct
aaaattcgggaacacaacgaagcagttttacgggatgctgcattggcttcaacttcaagc
tcagctgcctttggagaagaagatgaggcaactaagagagacaagaaagcaagtctcgca
tccatgctaagaaagaaagtaacatcaaaagatagaatagctcggaagcttttgagttca
cgggcaaggtag
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