Trifolium pratense (red clover): 123890063
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Entry
123890063 CDS
T08949
Name
(RefSeq) CCR4-NOT transcription complex subunit 3 isoform X1
KO
K12580
CCR4-NOT transcription complex subunit 3
Organism
tpra
Trifolium pratense (red clover)
Pathway
tpra03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tpra00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
123890063
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tpra03019
]
123890063
Messenger RNA biogenesis [BR:
tpra03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
123890063
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
123890063
BRITE hierarchy
SSDB
Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Not3
NOT2_3_5_C
DUF5965
DUF4407
Motif
Other DBs
NCBI-GeneID:
123890063
NCBI-ProteinID:
XP_045795556
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All DBs
Position
LG6:11412509..11422731
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AA seq
903 aa
AA seq
DB search
MGASRKLQGEIDRVLKKVQEGVEVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRD
QIKTWIQSSEIKDKKVSASYEQALVDARKLIEREMERFKICEKETKTKAFSKEGLGQQPK
TDPREKAKSETRDWLNNVVGELESQIDSFEAELEGLTVKKGKNRPPRLTHLETSITRHKA
HINKCELVLRLLDNDELSPEQVNDVKDFLDDYVERNQDDFDEFDDIDDLYSSLPLDKVDT
LEDLVTNPTSVAVTKTISSLPLDEGKILEDLVTIPTGLAKGVPGLSLKNPLVASVSLSAS
SQTSEQADETASQDSNSDIVAKTPPPKSGGISPSASTPTGNHATPASVNVSALNLSSAPA
AAVLPGSNSVRNVLENAVVNQSASPKEEEINSFPNRRPSPSLSDVALARSRNSLSNQATA
SIPLGSGNMVSSNGSPGSVPSASEITKRNILGADDRLGSSGMVQPLVSPLSNRLILPQVG
KANDGPTSVDSGTVSEAAAVSGRVFSPSVVPGMQWRPGSPFQNQNDAGQVRGRTEIAPDQ
REKFLQKLQQVQQQGPSTLLNMPSLVGGNHKQFSSQQQNPLLQQFNSQGPSVSSQSGMGL
GAQSPGFSGISSVSVQQPNSVLSPSSQQPIPGFAKDADKIEEQQQHQNFPDESAIESTSS
TGIGKNLIVEDDLKSPYVVDSPAGVSASLPEAAQISRDIDLSPGQPLQSNQSTGSLGVIG
RRNGVELGAIGDSFSASSVSSGGVRDQQYNLQMLEAAHFKIPQAKDSERPRTYTPRHPTI
TPPCYPQAQAPIVNNPAFWERLGLEPFGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYH
RKYNTWFQRHEEPKVATDEYEQGTYVYFDFHIANDDHNKHGWCQRIKNEFTFEYNFLEDE
LLV
NT seq
2712 nt
NT seq
+upstream
nt +downstream
nt
atgggtgcgagtcgaaagcttcaaggagaaatagatcgtgttcttaagaaggttcaagaa
ggcgttgaagtattcgatagtatctggaacaaggtttatgatacggacaatgcaaatcag
aaggagaaatttgaggcagaccttaaaaaggagattaagaagcttcagaggtatagagat
caaattaagacatggattcaatccagtgaaatcaaggataagaaggttagtgcctcgtat
gagcaagcgctggtggatgctcggaagttaattgaacgagaaatggaaagatttaagata
tgtgagaaggaaacgaagaccaaagcattctcgaaagaaggcttgggtcagcagcctaag
actgatccgagagagaaggctaaatcggagacaagggattggttaaacaatgtggttgga
gagttagaatctcagattgatagctttgaagccgagcttgaaggccttacagtcaagaaa
ggaaaaaacaggcctcctagattgacgcatctggagacatcaattactcggcacaaggct
catataaataaatgtgaattagttttgaggcttctagataatgacgaattgagtccagag
caggttaatgatgtgaaagatttcttggatgactatgtagagcgtaatcaggatgatttt
gatgagtttgatgatattgatgacctatacagttcattacctttagacaaggttgatact
ctagaagatcttgttacaaatcccacaagtgttgctgtgacaaagacaataagttcatta
cctttagacgaggggaagattctagaagatcttgttacaattcccactggtcttgcaaag
ggggtacctggtcttagcttgaagaatcctctggtagcatctgtatcactgtcagcgtca
tcacaaacatctgagcaagctgatgagacggcgtctcaggatagcaattcggacattgtg
gcaaaaactccacctcctaaaagtggtggaattagcccttctgcttcaacacctactggc
aaccatgctactcctgcctctgtgaatgtttctgctcttaacttgtccagtgcaccagct
gctgcagtccttcctggttcaaattctgttcgaaatgtcttggagaatgctgttgtaaac
cagtctgcctctccaaaggaagaagaaattaatagcttccctaaccgtagaccatctccg
tcgctttctgatgtagcacttgcgaggagcagaaacagcttgtcaaatcaagcaacagcc
agcatccctcttggttctggaaacatggtttctagtaatgggtcccctggttcagtccct
tcagcctcagaaataactaagcgaaacatattgggagctgatgatagacttggaagtagt
gggatggtgcagcctcttgtatccccgctaagtaatagattgatcttgcctcaggttggg
aaagctaatgatggacccacctcagttgactctggtactgtcagtgaagctgcagctgta
tctgggagagttttctccccttctgtggttcccggcatgcaatggagacctggaagtccc
tttcaaaatcagaatgatgcagggcaggttcgtggaagaactgaaatagctcctgatcaa
agggaaaagtttttgcagaagcttcagcaagtgcaacaacaagggcccagtacccttctt
aatatgccttcccttgtcggaggaaaccacaagcagttttcttcccaacaacaaaatcca
cttttgcagcagttcaactctcaaggcccatctgtttcttcacaatctggtatgggactt
ggtgcccaatccccaggcttcagcggtatttcgtctgtctcagtacagcagcccaactct
gttctttccccgtctagtcaacagccaattcccggttttgctaaagatgcagataaaatt
gaagaacagcagcaacatcagaattttcctgatgagtcagcaattgaatctacttctagc
acagggattggcaagaatctcatagttgaagatgatttgaaatcgccatatgttgtagat
tcacctgcaggtgtatctgcctctcttccagaagctgctcaaatttccagagatattgat
ttgtctcctggccaacctttacaatccaatcaatccactggcagccttggtgtaattgga
agaagaaatggtgttgaacttggagccattggtgatagctttagtgcatcaagtgttagt
tctggtggagttcgtgatcaacagtataatttacaaatgcttgaggcagcacacttcaaa
attccacaagctaaagactcagaacgtcctagaacctatactcctaggcacccaacaatt
acacctccttgctatcctcaagcacaagcgcctatagttaacaatcctgccttttgggag
agattaggtcttgaaccatttggcactgataccctgttctttgcattttattatcaacag
aacacataccaacaatatttggctgcaaaggagctgaagaagcagtcttggagataccac
cgaaagtataatacatggtttcagcggcatgaagagcccaaagttgctactgatgaatat
gagcagggaacatatgtgtactttgattttcatattgcaaatgatgatcataataaacat
ggatggtgtcaaagaatcaagaatgaattcacttttgaatataattttcttgaagatgag
cttcttgtatag
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