Trifolium pratense (red clover): 123890425
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Entry
123890425 CDS
T08949
Name
(RefSeq) polyadenylation and cleavage factor homolog 4 isoform X1
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
tpra
Trifolium pratense (red clover)
Pathway
tpra03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
tpra00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
123890425
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tpra03021
]
123890425
03019 Messenger RNA biogenesis [BR:
tpra03019
]
123890425
Transcription machinery [BR:
tpra03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
123890425
Messenger RNA biogenesis [BR:
tpra03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
123890425
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf_PCFS4
CID
Motif
Other DBs
NCBI-GeneID:
123890425
NCBI-ProteinID:
XP_045795994
LinkDB
All DBs
Position
LG6:complement(6564774..6571230)
Genome browser
AA seq
1007 aa
AA seq
DB search
MDMESTRRSLDRSREPGAKKPRLIDELQQGSNPTARPFSQRQGGGSGVASMLSAGRFRMN
DRDSDSSDGGYHPQPPPHQELVTQYKAALAELTFNSKPIITNLTIIAGENLSAAKSIAGA
VCANILEVPSDQKLPSLYLLDSIVKNIGRDYIKYFAARLPEVYCNTYRQVEPPVHSSMRH
LFGTWRGVFPPQTLQIIEKELGFTPAVNGSASASATLRSDSQSQRPAHSIHVNPKYLERQ
RLQQSSRTKGVFNDMTGVISNSNEEPERPDRALGAARPWLDPRINMHNNQRTHRDAFNDS
VPEKSIGGAYGDTEYNSSLSNNLGSGVGRTGSRLIGGVAETLSGQRSGFGLKHGFSNHEA
PKPMNLDAHNIRNSVMSRNWKNSEEEEFVWDEMNSGVPDHVPNVSSNLSSDPWMADDDNL
ETEDHLQITHPIGRKVDKEISTVKKQLPSSGGHPSLSWELQKQIPSSKLNMKSGHSEISV
SAPSGLPKSSNSLAVKIKNQSSMLHTIGTAKIMGQQEFDSEGAESPSEQSPSRQQSLSVP
VTTHHPPSSQYIRDPAPAIGPNVQVGNFRKSQEKDMRGLLLSSATSYQPKPQQRQLGPSQ
AEVTLKAKQPLKSKVSLAKAKPTATLEKSTTKNLPAPSVKSGIIPNKLITKSLDASNRPS
QSGVKPTRSVGPSPTTFVSPGSSAVSLGSPNDYPQASPKLPQGKAGKKQKDSNQSSASSN
ERGASAPSSNATNKNTLNPFSNLLSSLVAKGLISAGAESAAVLPSEMVMRSKDQTENITS
SSSSPVASAPDSAAVPVKSSRDEADAAAKASLALSQSTSTEIRNLIGFDFKPDVIREMHP
HVITELLDELPHHCSNCGIRLKQQEQFDRHLEWHATKEREQNGPTGSSRRWYAKSDDWIA
GKAEYLSGSEFTDSADEYDDKMGDGSQLDSMVVADENQCLCVLCGELFEDVYCQESDQWM
FKGAVYLNNSDSDSEMESRNLGPIIHARCLSENSISGVANTVRLIVN
NT seq
3024 nt
NT seq
+upstream
nt +downstream
nt
atggatatggagagcacgcgtagatcgttggatagatcgagagaaccaggtgctaagaag
cctcgattgatcgatgagcttcaacaaggttcaaatccaactgcacgaccgttttctcaa
cgacaaggtggtggttctggtgttgcttcgatgttatcggccggtaggtttcgaatgaac
gatagagattctgatagcagtgacggtggttatcacccacaaccaccgccgcatcaagag
cttgtgactcagtataaggctgctcttgctgagcttactttcaactcgaaaccgataatt
accaatttgactataattgctggagagaatctttctgctgcaaaatcaattgctggagct
gtttgtgctaacattctagaggtaccaagtgaccaaaagctgccatctctttatctctta
gacagtattgttaagaatattgggcgggattacataaaatactttgctgccaggctaccc
gaggtatactgcaatacatacagacaggttgagcctcctgtccattcaagtatgaggcat
ctttttggaacttggagaggtgtctttcctcctcagacccttcagataattgagaaggaa
ctaggcttcactccagcagtcaatggttcagcttctgcatctgccacccttagaagtgat
tctcagtctcaacgtccagctcatagcattcatgtgaatcccaaatatttagaaaggcag
cgtcttcagcagtccagcaggaccaagggagtatttaatgatatgactggagttatttca
aactcaaatgaggaaccagagaggccagatagagctttgggtgctgcacgaccatggctg
gatcctaggattaacatgcataataatcagcgtactcatagagatgcatttaatgattct
gttcctgaaaagagcattggcggtgcctacggagacactgaatataattctagtctttca
aataatttgggctcaggtgttggaagaactggaagtaggctcattggcggtgttgcagag
acgttatccgggcaaagaagtggttttggcctcaaacatggtttttcaaatcacgaagca
ccgaaacctatgaatttggatgcacataacattaggaacagtgtgatgtcaaggaactgg
aaaaattcagaggaagaggagtttgtgtgggatgagatgaactctggtgtgcctgatcat
gtacctaatgtctctagcaacttgagctcagacccatggatggccgatgatgacaatttg
gaaactgaagatcacctccaaatcacacacccaattggaagaaaggttgataaagaaata
tctaccgttaagaaacaactaccatcatctgggggtcatccatcattatcatgggaattg
cagaagcagatcccaagttccaaactgaatatgaagtcaggtcactcagaaatatctgtt
tctgctccgagtggcttacctaaaagttcaaattctttggctgtgaagataaagaatcag
tcttctatgctgcatacaataggaacagccaaaattatgggacagcaggaatttgattct
gagggggccgaatccccttctgaacagtcaccttcccgacaacagtctctatcagtgcca
gtaacaacacatcaccctccttcaagtcaatatattagagatcccgcacctgccattggt
cccaatgttcaggttggtaactttcgaaaatcccaagaaaaggacatgcggggtctatta
ttatcttcggcaacttcttatcagccaaaacctcagcaacgtcagctgggcccttcacag
gctgaagttactcttaaagctaagcagccactcaagtctaaagtttctttagccaaagcc
aaacccacagccactttagaaaagtcaaccacaaagaatcttccagctccatctgtgaag
agtggaatcatcccgaacaaattaattaccaaaagtctggatgcaagtaatcgtccatct
caatcaggggttaagcctactcggtcagttggtccttcccctaccacatttgtttctccg
ggttcttcagccgtgtcattaggttctccaaatgattatccacaggcttcgccaaaacta
cctcaagggaaggctggaaagaagcaaaaggattctaatcaatcctctgcttcctctaat
gaacgtggcgcatcagctcctagctcaaatgccaccaataagaataccttaaatccattt
tcaaatcttttaagctctttagttgccaaaggtttgatatctgcaggagcggagtcagca
gctgtattgccaagtgagatggtgatgcgatcgaaagaccaaactgaaaacattacttcc
agttcctcttcgccagttgcttcagctcctgattctgcagccgtcccggtaaaatcttcc
agagatgaggcagatgctgctgcaaaagcctcacttgccttgtctcaatcaactagcaca
gaaattagaaatctcattggctttgatttcaaacctgatgtaattcgagaaatgcaccca
catgtaatcacagaattattggatgaactcccacatcattgcagtaattgtggtattagg
cttaaacagcaagaacagtttgataggcacttggaatggcatgctacaaaagaaagagaa
caaaatggtccgactggatcatcaagaagatggtatgcaaaatcagatgactggattgct
ggcaaggccgaatatctatccgggtctgaatttactgattctgccgatgaatatgatgat
aaaatgggagacggcagtcaattggattctatggttgtagcagatgaaaaccagtgcttg
tgtgtattgtgtggggagctatttgaagatgtatactgtcaggaaagcgaccagtggatg
ttcaagggggctgtttatctgaacaattcagatagcgatagtgagatggaaagtagaaat
ttgggccccatcattcatgctagatgcttatcagagaactcaatatctggtgtggccaat
acagtaaggctcatagtgaattga
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