Trifolium pratense (red clover): 123890563
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Entry
123890563 CDS
T08949
Name
(RefSeq) probable polyribonucleotide nucleotidyltransferase 1, chloroplastic
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
tpra
Trifolium pratense (red clover)
Pathway
tpra03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tpra00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
123890563
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tpra03019
]
123890563
03016 Transfer RNA biogenesis [BR:
tpra03016
]
123890563
Enzymes [BR:
tpra01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
123890563
Messenger RNA biogenesis [BR:
tpra03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
123890563
Transfer RNA biogenesis [BR:
tpra03016
]
Prokaryotic type
tRNA degradation factors
123890563
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
S1
PNPase
KH_1
OB_RRP5_4th
Motif
Other DBs
NCBI-GeneID:
123890563
NCBI-ProteinID:
XP_045796155
LinkDB
All DBs
Position
LG6:complement(12354576..12376385)
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AA seq
931 aa
AA seq
DB search
MLACSTFHGPSTFHRHSQPSKFLLSKPILFSPRPRFTTFGGKLKFRSLFSSKNRRHSFGI
KASVDSSSEVLESIDVDGPHIGPQRYSVKIPVGDRHILVETGHMGRQASGSVTVTDGETV
LYTTVCLSDTPSEPSDFFPLSVNYQERFSAAGRTSGGFFKREGKTKDHEVLICRLIDRPL
RPTMPKGFYHETQILSWVLSYDGMHIPDSLAVTAAGIALALSEVPMSKAVAGVRVGLVGD
KYIVNPTNEEMENSELDLMLAGTDSAILMIEGYGNFLPEEKLLKAVEVGQDAVRAICNEV
EALVKKCGKPKMIDAIKLPPPELYKHVEEIAGDELIKALQIRNKIPRRKALSSLEEKVLK
ILTENGYVANDSAPSSNAETIAEILEDEDEDEEVIVDGEVDEGDVHIKPTPRKPTPLFSE
VDVKLVFKEVTSMFWRKRIVEGGKRSDGRTPHEIRPINSSCGLLPRAHGSALFTRGETQS
LAVATLGDSKMAQRVDNLIGVDDYKRFYLQYSFPPSCVGEVGRIGAPSRREIGHGMLAER
SLETILPSDKDFPYTIRVESTITESNGSSSMASVCGGCLALQDAGVPIKCSIAGIAMGLV
LDTKEFGGDGTPLILSDITGSEDASGDMDFKVAGNENGITAFQMDIKVGGITLPIMKEAL
LQARDGRKHILGEMMKCSPPPAKSLSMYAPLIHIMKVRPDKVNLIIGSGGKKVRSIIEQS
GIEGIDAEDDGTVKIFARDLAGLEKSKAIISNLTMVPNIGDIYRNCEIKSIVPYGVFVEI
APGREGLCHISELSSGWLAKPEDAFKVGDRIDVKLKEINEKGQLRLSYRAMLPDADSDSS
NSSDEGSSEEVTSLTNAGLVEDKVKTPKGTASSKRSSEDNSVLPSKKFIRRSVSPSQEKP
ISNKDKIKKSGNKAVSSVSSKDENSLVGDEA
NT seq
2796 nt
NT seq
+upstream
nt +downstream
nt
atgctagcatgtagcaccttccatggcccttccacattccaccgccattctcaaccttct
aaattcctactctccaagcctatcctcttctctcctcgtcctcgcttcaccactttcggt
ggtaaattaaagttccgttctctgttttccagtaaaaatcgccgtcacagtttcggtatc
aaagcttctgttgactcatcgtcggaggttttagagtcaattgatgttgatggcccgcac
attggaccacaacggtattccgtcaagattcccgttggtgatagacatattttggttgag
actggtcatatgggaaggcaagcaagtggttctgttactgttacggatggagagactgtt
ttgtacaccactgtttgtttgtctgatactcctagcgagccatccgattttttccctctt
tctgtgaattatcaagagcgtttttcagctgctggtcgcactagcggaggtttttttaaa
cgagaaggaaagacaaaggatcacgaggttcttatttgtagattaattgataggcctctg
cgtcctactatgcctaagggcttctaccacgaaactcaaatattatcttgggttttaagc
tatgatggaatgcatatccccgattccttggctgtcactgcagctggcatagcacttgca
ctttcagaagtgcctatgtcaaaagcagttgctggagttcgagttggtctcgttggtgat
aagtatatagtaaatcctacaaatgaggagatggaaaactctgagttggacctcatgctg
gctggcacagatagtgcaatattgatgatagagggttatgggaattttcttccagaagag
aagctacttaaagctgtagaagttggtcaggatgcagtgcgagcaatctgtaatgaggta
gaagccttggtcaagaaatgtgggaagccaaagatgattgatgccatcaagttacctcct
ccagagctttataaacatgttgaggaaattgctggtgatgagttgataaaagctcttcaa
attagaaacaaaataccaagaaggaaagccctttcatcattagaagaaaaggttcttaag
atacttacagaaaatgggtatgtcgcaaatgattcagcaccaagtagtaatgctgaaacc
atcgcagagattcttgaggatgaggatgaagacgaggaagtaattgttgatggtgaagtt
gatgaaggtgatgttcatataaagcccactccacgcaaaccaacacctttattttctgag
gtagatgtgaagttggtatttaaagaagttacctccatgttttggaggaaacgtatagtg
gagggagggaaaaggagcgacgggagaacgccacacgaaatccgaccaattaactcaagt
tgtggcctattgcctagagcacacggaagtgctctgtttacgaggggcgagacacagtcg
ctagctgttgctacactcggagatagcaagatggcacaacgagtagacaatcttataggt
gttgatgattacaaaaggttctatctgcagtattcgtttcctccctcgtgtgttggggag
gttggccggattggtgcaccgagtagaagagaaattggtcacgggatgcttgctgagaga
tcccttgaaacaattttgccttctgataaagatttcccttacactattcgtgttgagagt
actatcacagaaagcaatggttcttcaagcatggcatctgtttgtggaggttgcttagcc
ttgcaagatgctggggttcctattaaatgctctattgctggaattgcaatgggtttggtt
cttgataccaaggaatttggtggagatggaactccgcttattctgtctgacataactgga
tcggaagatgcatctggagatatggattttaaggttgctgggaatgaaaatggcataact
gcatttcagatggacattaaggtgggtggaattactttgcccatcatgaaagaagcactg
ctacaggcaagagacggcaggaaacacatacttggagaaatgatgaaatgctcgccccct
ccagcaaaaagcctttccatgtatgctcctctgattcacattatgaaggttagacccgat
aaagtaaatcttataatcggttccggtgggaaaaaagtgaggagcattattgagcaatct
ggaatagagggtattgatgctgaagatgacggcactgtgaaaatatttgcgagagatttg
gctggtttagagaagtctaaggctatcattagtaatttaacaatggttccaaatattggt
gatatatataggaactgtgaaataaaatcaatagttccatatggagtttttgtagagata
gcacctggacgagagggactttgccatattagtgaactgagttcaggttggctagctaag
ccagaagatgctttcaaggtgggagatcgtattgatgtaaaactcaaagagataaatgaa
aagggacagttgcgtctaagttaccgagcaatgcttccagatgcagattcagacagttca
aattcaagtgatgagggttcgtcggaagaagttaccagcctgacaaatgctggtttagtt
gaagataaggttaagacacctaaaggcacagcctcatctaaaagaagttcagaggacaat
tctgtacttccatcaaaaaagtttatcaggagatcggtaagcccttcccaagagaagccg
atctcgaacaaagacaagataaagaagagcggcaacaaagcagtcagcagtgtctctagc
aaagatgaaaatagtttggttggtgacgaggcataa
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