Trifolium pratense (red clover): 123890631
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Entry
123890631 CDS
T08949
Name
(RefSeq) polygalacturonase-like
KO
K01184
polygalacturonase [EC:
3.2.1.15
]
Organism
tpra
Trifolium pratense (red clover)
Pathway
tpra00040
Pentose and glucuronate interconversions
tpra01100
Metabolic pathways
Module
tpra_M00081
Pectin degradation
Brite
KEGG Orthology (KO) [BR:
tpra00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
123890631
Enzymes [BR:
tpra01000
]
3. Hydrolases
3.2 Glycosylases
3.2.1 Glycosidases, i.e. enzymes that hydrolyse O- and S-glycosyl compounds
3.2.1.15 endo-polygalacturonase
123890631
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Motif
Pfam:
Glyco_hydro_28
Pect-lyase_RHGA_epim
NosD
Pectate_lyase_4
Motif
Other DBs
NCBI-GeneID:
123890631
NCBI-ProteinID:
XP_045796226
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Position
LG6:complement(28297621..28301513)
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AA seq
398 aa
AA seq
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MDCAIGTKFILVISCILCITMISSSNATPTSTYNVIKFGAKPDGKTDSTESFVNAWKSAC
GSLVPATIYVPKGRYLLNAINFRGPCKRKVTFLNGGTLVASEDYKVIGNSDFWILFNHVD
NLVVSGGKLDAKGAGFWNCRRSGKNCPVGARTMTFNWVNNLVVSGITSINSQLSHLVINT
CNNVTVRNVRLIAPDKSPNTDGIHVQYSNGVTINGCTMQTGDDCISIGDATYNIFMSNIK
CGPGHGVSIGSLGQKIDEKGVENVTLTNAIFYGSDNGVRIKSWARPSNGFVRNVLFQNLV
MNNVENPIIIDQNYCPNNQGCPGQTSGIKISQITYKNIHGSSATKEAVTFDCSPSTPCQG
IKLEDINLNYNNKAATSSCKNIGGTSTGTLVPESCLLN
NT seq
1197 nt
NT seq
+upstream
nt +downstream
nt
atggattgtgctataggtactaagttcattttggtaatttcatgtatcttatgcattacc
atgataagttcatccaatgcaactccaacttctacttacaatgtaattaaatttggagca
aaaccagatggaaaaactgattcaactgaatcatttgtaaatgcttggaaatcagcatgt
ggtagcttagttcctgccacaatttatgtgccaaaagggaggtacttgttgaatgccatt
aattttagagggccatgtaagaggaaggtgacattcctcaatggtggaactcttgtggct
tctgaagattataaggttattggaaattcagatttttggattttgtttaatcatgttgat
aatcttgttgtttctggtgggaaattggatgctaaaggagctggattttggaattgtaga
agatctggaaagaattgcccggtcggagctaggacaatgacattcaactgggtaaataac
ttagtggttagtggcattacttcaattaacagccaactaagtcacctagttatcaacaca
tgcaacaatgttactgtaagaaatgtaaggcttattgcacctgacaagagtccaaacact
gatggcattcatgttcaatactcaaatggggttaccataaatggatgtacaatgcaaaca
ggtgatgattgcatatctattggtgatgcaacttacaatatcttcatgtcaaacattaaa
tgtggtcctggtcatggtgtaagcattggaagtttaggccaaaaaatagacgaaaaaggt
gtcgaaaatgtgacactaacaaatgccatcttctatggatcagacaatggggttaggata
aaatcatgggccaggcccagcaacggtttcgttaggaatgttttgtttcaaaaccttgta
atgaacaatgttgagaatcccatcatcattgatcagaattactgccccaacaatcaaggt
tgtcctggtcagacttcgggaattaagataagccaaattacttataagaacattcatgga
agttcagcaacaaaagaggcagtaacatttgattgcagccctagtactccatgccaaggg
atcaaattggaagatataaacttaaattacaacaacaaagctgctacatcatcctgtaag
aacattggtgggacgagcactggaacattggtgccagaaagttgtctattaaattaa
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