Trifolium pratense (red clover): 123891265
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Entry
123891265 CDS
T08949
Name
(RefSeq) BRCA1-associated RING domain protein 1 isoform X1
KO
K10683
BRCA1-associated RING domain protein 1
Organism
tpra
Trifolium pratense (red clover)
Pathway
tpra03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
tpra00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
123891265
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tpra03019
]
123891265
04121 Ubiquitin system [BR:
tpra04121
]
123891265
03036 Chromosome and associated proteins [BR:
tpra03036
]
123891265
03400 DNA repair and recombination proteins [BR:
tpra03400
]
123891265
Messenger RNA biogenesis [BR:
tpra03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Negative regulators of mRNA 3' end processing
123891265
Ubiquitin system [BR:
tpra04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
BRCC complex
123891265
Chromosome and associated proteins [BR:
tpra03036
]
Eukaryotic type
Centrosome formation proteins
Centrosome duplication proteins
Regulators of centriole replication
123891265
DNA repair and recombination proteins [BR:
tpra03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-core complex
123891265
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BRCT
zf-HC5HC2H
BRCT_2
zf-C3HC4
zf-HC5HC2H_2
zf-RING_6
zf-RING_UBOX
zf-C3HC4_3
RTT107_BRCT_5
PHD_NSD
zf-C3HC4_2
PTCB-BRCT
zf-RING_5
zf-C3HC4_4
Prok-RING_4
zf-RING_2
Motif
Other DBs
NCBI-GeneID:
123891265
NCBI-ProteinID:
XP_045797060
LinkDB
All DBs
Position
LG6:35990382..35996904
Genome browser
AA seq
703 aa
AA seq
DB search
MEDSGKSNLNSSSKLLNSWMLNFQKLALELKCSLCLNLFKQPVLLPCNHLFCSSCLVDGT
EIGTCSKCALCKTKYAETDVRHLSFLENMVAIYKNMDATFCANAFQQRSSDNTRVLEQCQ
TLRNSTGSNKKADKVLHNSHISNGVGVGQNHKSGITMNGKAGELEMSRRGGGNNHIAVKP
NSMRCSQTEIGGHMEMDLNQVTQSAPDSPPFCDTKGSDNGCSDQNSEKPLNLERSENSSL
TRANTGKGNMKERMAQFRSESSASENEDLTRDLKRQKNLTNGDGIIQQRTSFHNKLVDSP
CDSGTNFEKDPGALIPSNAPNDLCPNTSIFCLFCQSFRISEATGPMLHYANGISVAGDAA
MQPDVLHVHKACIDWAPQVYFVGDTVKNLKAEVARGAKLKCTKCGLKGAALGCYVKSCRR
TYHVPCAMDISTCRWDHVDYLLLCPVHSNVKFPNEKSSHDKQAIQNHPVSSHLPFQQSNQ
QLGASEDYGKKMVFCGSALSNEEKLLMINFARKVGATVTKCWTSNVTHVIAATDANGACS
RTLKVLRAILNGQWILKMDWIRACMEAMNLVEEELYEVDLDNQGCQGGPKAGRLRALANE
PKLFNGLKFYFSGDYDLSYKKYLEDLVEGGGGAVLKSKDELEVGRDANLLAVYNLDPPQG
CKLGEEVSILWQRLNEAEDLTANTVGHTWILESIAACKLQPFS
NT seq
2112 nt
NT seq
+upstream
nt +downstream
nt
atggaagattctggaaaatccaatctcaacagtagtagtaaattattgaattcatggatg
cttaactttcagaaactcgctctcgaactcaagtgctctctctgcttgaacttgttcaaa
caaccagttttgcttccatgtaatcacttgttctgcagttcctgcttggtggatggtact
gagattggtacttgttctaagtgtgctctctgtaagactaagtacgctgaaacagatgta
aggcatttgtcttttctggaaaacatggtagcaatttataagaatatggatgcgacattt
tgtgctaatgcgtttcagcaacgatcttctgataacacgagggttttggagcagtgccaa
actcttcgcaattcaactggtagtaataaaaaggctgataaggttctgcacaattcacac
atttcaaatggagttggggttggccagaatcacaaatctggaattacaatgaatggtaaa
gccggggagcttgaaatgtctcgcagaggagggggtaacaaccacattgcagtgaagcct
aattcaatgagatgttcccagacagaaattgggggtcatatggaaatggatttgaatcaa
gtgacacaatcagcaccagatagccctccattttgtgacaccaaaggttctgataatggt
tgcagcgatcaaaacagtgagaagcctctcaatcttgagagatctgaaaattcgtcattg
acaagagcaaacacaggaaaaggtaatatgaaagaaagaatggctcaattcaggtctgaa
agttctgcctctgaaaatgaggatcttacgagagatcttaagagacaaaagaatcttact
aatggagatggtattattcaacaacgcacctcatttcataataagcttgtggattctccc
tgtgactcgggcactaattttgaaaaggaccccggtgcactcatcccttcaaatgcacca
aatgacttgtgcccaaatactagcatcttctgcttgttttgccagtcctttagaatttca
gaggctactgggccaatgctgcattatgcaaatgggatttcagttgcaggagatgctgca
atgcaaccagatgtcctgcatgtgcataaagcttgtatcgactgggcaccacaagtgtat
tttgttggcgatactgttaagaatttgaaggcagaagtggccaggggagcaaagcttaaa
tgcacaaaatgcggtctaaagggagctgctcttggttgctatgtcaaatcatgtagaaga
acttatcatgtcccttgtgcaatggacatctctacttgccgctgggatcatgtggattat
ctcttgctatgtcctgttcattcaaatgtcaaatttccaaatgagaaatccagtcatgat
aaacaggcaattcagaaccatcctgtttcatctcatctgccatttcaacagtcaaatcaa
cagttgggagcttcagaggattatggtaaaaaaatggttttctgtggatctgctctatcg
aatgaagaaaagttgctaatgattaattttgcaagaaaggttggtgctacagtgaccaag
tgttggacctcaaatgtcacccacgtgatcgcggcgactgatgcaaatggagcatgctcc
aggacattgaaagttttgagggcgattctaaatggacaatggatcctaaaaatggactgg
ataagagcatgtatggaagcgatgaatctcgtagaagaagaactgtatgaagttgatctt
gacaaccaagggtgtcagggtggcccaaaagctggcagacttagggcattggccaatgag
ccaaagctattcaatggcttaaagttttatttttctggtgattatgatctgagttataag
aaatatcttgaagatttagttgaaggaggaggaggtgctgttttgaaaagcaaggatgaa
ttggaagtaggaagagatgcaaacttgctagctgtttacaatcttgatcccccacaagga
tgtaagctgggggaggaagtttcaattctttggcagagactgaatgaagcagaggattta
actgccaatactgttggtcacacatggattctggagtcaattgctgcatgtaagttgcag
ccttttagttag
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