Trifolium pratense (red clover): 123891508
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Entry
123891508 CDS
T08949
Name
(RefSeq) THO complex subunit 4A-like
KO
K12881
THO complex subunit 4
Organism
tpra
Trifolium pratense (red clover)
Pathway
tpra03013
Nucleocytoplasmic transport
tpra03015
mRNA surveillance pathway
tpra03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
tpra00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
123891508
09122 Translation
03013 Nucleocytoplasmic transport
123891508
03015 mRNA surveillance pathway
123891508
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tpra03019
]
123891508
03041 Spliceosome [BR:
tpra03041
]
123891508
Messenger RNA biogenesis [BR:
tpra03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
123891508
TREX complex
123891508
Spliceosome [BR:
tpra03041
]
Complex C
Other components
EJC/TREX
123891508
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
123891508
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
FoP_duplication
DUF5728
RRM_3
Motif
Other DBs
NCBI-GeneID:
123891508
NCBI-ProteinID:
XP_045797342
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Position
LG6:complement(31160573..31163648)
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AA seq
299 aa
AA seq
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MAAGMDMSLDELINKSTARRKNNAVHGHGPNRHLAVRNPVRMMPYSVSQPQEVMKMQVAR
EEWRRSSVDVQEMVLDHGAVQTKPITKLYLSNLDQRVTDEDIHLLFLEEGELERYSIHYD
QFGRSKGTAEVVFTRQSDALAALKRYNNMKLDGKTLQIELVGSSLVTTAAATTPLDSILG
RPNNGFVRCGIPIPGLMNSGTSLVTPADMPPALGRSSLLGIPSDVFVREERKINSFAHGH
LPRAKVHTQKASFKDIDHGFERYRRRVQAKRHIPKLSVEDLDEDLEKYRSEAKQICKKN
NT seq
900 nt
NT seq
+upstream
nt +downstream
nt
atggccgccggcatggacatgtcactagacgaactcatcaacaaatccaccgctcgccgc
aaaaacaacgccgttcacggtcacggaccaaaccgccacctcgccgttcgtaatccggtc
agaatgatgccgtactccgtttctcagcctcaggaagtgatgaaaatgcaggttgcgaga
gaagaatggagaagaagtagtgttgatgttcaagaaatggttttggatcatggtgctgtt
caaaccaaacctatcactaaactctatctttctaacttggatcaaagggttaccgatgaa
gacattcatctgttgttcttagaagagggtgagttggaaagatattccattcactatgat
cagtttgggagatcaaaaggaacagcagaagttgtctttacaaggcagtctgatgcttta
gcagccctcaagaggtacaacaatatgaagcttgatggaaagacattgcaaattgagctt
gttggatcaagtttggttactactgctgccgccacaacacctcttgatagcatactggga
agaccaaataatggctttgtaaggtgtggaattccgattcctggtcttatgaactctgga
acaagtttggttactcctgctgatatgcctcctgctcttggtcgtagtagcttactggga
ataccaagtgatgtctttgtaagggaagagagaaagattaatagctttgcacatggtcat
cttccaagagcgaaggtccatacacaaaaggcatcttttaaagatattgatcatggcttt
gagaggtatcgccgccgtgtacaagcaaaacgccatattccaaagctgtctgttgaagat
cttgatgaagacttggagaagtatcgctcagaagctaagcagatatgcaaaaaaaattga
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