KEGG   Trifolium pratense (red clover): 123891508
Entry
123891508         CDS       T08949                                 
Name
(RefSeq) THO complex subunit 4A-like
  KO
K12881  THO complex subunit 4
Organism
tpra  Trifolium pratense (red clover)
Pathway
tpra03013  Nucleocytoplasmic transport
tpra03015  mRNA surveillance pathway
tpra03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:tpra00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    123891508
  09122 Translation
   03013 Nucleocytoplasmic transport
    123891508
   03015 mRNA surveillance pathway
    123891508
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:tpra03019]
    123891508
   03041 Spliceosome [BR:tpra03041]
    123891508
Messenger RNA biogenesis [BR:tpra03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    EJC complex
     123891508
    TREX complex
     123891508
Spliceosome [BR:tpra03041]
 Complex C
  Other components
   EJC/TREX
    123891508
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    123891508
SSDB
Motif
Pfam: RRM_1 FoP_duplication DUF5728 RRM_3
Other DBs
NCBI-GeneID: 123891508
NCBI-ProteinID: XP_045797342
LinkDB
Position
LG6:complement(31160573..31163648)
AA seq 299 aa
MAAGMDMSLDELINKSTARRKNNAVHGHGPNRHLAVRNPVRMMPYSVSQPQEVMKMQVAR
EEWRRSSVDVQEMVLDHGAVQTKPITKLYLSNLDQRVTDEDIHLLFLEEGELERYSIHYD
QFGRSKGTAEVVFTRQSDALAALKRYNNMKLDGKTLQIELVGSSLVTTAAATTPLDSILG
RPNNGFVRCGIPIPGLMNSGTSLVTPADMPPALGRSSLLGIPSDVFVREERKINSFAHGH
LPRAKVHTQKASFKDIDHGFERYRRRVQAKRHIPKLSVEDLDEDLEKYRSEAKQICKKN
NT seq 900 nt   +upstreamnt  +downstreamnt
atggccgccggcatggacatgtcactagacgaactcatcaacaaatccaccgctcgccgc
aaaaacaacgccgttcacggtcacggaccaaaccgccacctcgccgttcgtaatccggtc
agaatgatgccgtactccgtttctcagcctcaggaagtgatgaaaatgcaggttgcgaga
gaagaatggagaagaagtagtgttgatgttcaagaaatggttttggatcatggtgctgtt
caaaccaaacctatcactaaactctatctttctaacttggatcaaagggttaccgatgaa
gacattcatctgttgttcttagaagagggtgagttggaaagatattccattcactatgat
cagtttgggagatcaaaaggaacagcagaagttgtctttacaaggcagtctgatgcttta
gcagccctcaagaggtacaacaatatgaagcttgatggaaagacattgcaaattgagctt
gttggatcaagtttggttactactgctgccgccacaacacctcttgatagcatactggga
agaccaaataatggctttgtaaggtgtggaattccgattcctggtcttatgaactctgga
acaagtttggttactcctgctgatatgcctcctgctcttggtcgtagtagcttactggga
ataccaagtgatgtctttgtaagggaagagagaaagattaatagctttgcacatggtcat
cttccaagagcgaaggtccatacacaaaaggcatcttttaaagatattgatcatggcttt
gagaggtatcgccgccgtgtacaagcaaaacgccatattccaaagctgtctgttgaagat
cttgatgaagacttggagaagtatcgctcagaagctaagcagatatgcaaaaaaaattga

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