Trifolium pratense (red clover): 123892583
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Entry
123892583 CDS
T08949
Name
(RefSeq) pre-mRNA-splicing factor 38
KO
K12849
pre-mRNA-splicing factor 38A
Organism
tpra
Trifolium pratense (red clover)
Pathway
tpra03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
tpra00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
123892583
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
tpra03041
]
123892583
Spliceosome [BR:
tpra03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
123892583
Complex C
U4/U6.U5 tri-SnRNP related factors
123892583
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Gene cluster
GFIT
Motif
Pfam:
PRP38
PRP38_assoc
HIND
Motif
Other DBs
NCBI-GeneID:
123892583
NCBI-ProteinID:
XP_045798397
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Position
LG1:complement(12801814..12805592)
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AA seq
394 aa
AA seq
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MANRTDPAAKSIRGTNPQNLVEKILRSKIYQNTYWKEQCFGLTAETLVDKAMELDHLGGT
YGGNRKPTPFMCLVMKMLQIQPEKEIVIEFIKNDDYKYVRILGAFYLRLTGSDTDVYHYL
EPLYNDYRKLRRKLADGNFALTHVDEVIDELLTTDYSCDIAMPRIKKRWTLESLGALEPR
QSALEEDFEEEEENEDNEQPAEELEDKAHEKDYYRGRSPARERDRDRRRDSHRHRDRDYD
RDYDRDYDRERGRGRDRDRDRDRDRENERDRDRERDRDRYRLREEKDYGREREGRERERR
DRDRDRGRRRSYSRSRSRSRDRKEHDGGESRKRHARNSISPRRHGDGAEDGEPKKKKEKK
EKKEKKDDGTDHPNPEIAEANKLRASLGLKPLRM
NT seq
1185 nt
NT seq
+upstream
nt +downstream
nt
atggcgaatcgtactgatccagcagctaagagcataagaggaacaaaccctcagaaccta
gttgagaagattctccgctccaagatctaccagaacacatattggaaggaacaatgtttc
ggtttaacggcggagacattagtcgacaaggccatggaactcgaccacctcggcggtaca
tacggtggtaaccggaaacccactcctttcatgtgcctcgtcatgaaaatgctccagatt
cagcctgagaaagaaatcgtcatcgaattcatcaaaaacgatgattacaagtatgtgagg
atacttggtgcattctatttgcgtcttactggatctgatactgatgtgtaccattatctg
gagccattatataatgattataggaaactgcggcgaaaattagctgatggaaactttgct
ttgacacatgttgatgaggtaattgatgaacttctcacaacagattattcctgtgatatt
gctatgccgcgtattaagaaaaggtggactcttgaatctcttggtgcattagaacctaga
caaagtgcacttgaagaagattttgaagaggaagaggagaatgaggataatgaacagcct
gctgaggagcttgaagataaagcccatgagaaggattattatcgtgggcgaagccctgca
agggagagagatagggatagaagacgtgatagtcatagacacagggatcgcgactatgac
agagattatgatagagattatgacagagagcgtggacgtggccgagatagagatagagac
agggacagggatagggaaaatgaaagggacagagatagggagagggacagagacagatat
cgtctgagggaagaaaaggattatggtcgtgagagagagggtagggagcgtgagaggaga
gacagggatcgtgaccgcggtaggaggaggagctactcaaggagccgaagtagaagcaga
gatcgcaaggaacatgatggtggtgagtccagaaagagacatgctcggaatagcataagt
cctagaaggcatggagatggagctgaggatggcgagccaaagaagaaaaaggagaagaaa
gaaaagaaggaaaagaaggatgatgggactgaccatccaaatccagagattgccgaagca
aacaagttacgagcatcactgggtttgaaaccactgaggatgtga
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