Trifolium pratense (red clover): 123892687
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Entry
123892687 CDS
T08949
Name
(RefSeq) general transcription factor IIH subunit 2
KO
K03142
transcription initiation factor TFIIH subunit 2
Organism
tpra
Trifolium pratense (red clover)
Pathway
tpra03022
Basal transcription factors
tpra03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
tpra00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
123892687
09124 Replication and repair
03420 Nucleotide excision repair
123892687
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tpra03021
]
123892687
03400 DNA repair and recombination proteins [BR:
tpra03400
]
123892687
Transcription machinery [BR:
tpra03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
123892687
DNA repair and recombination proteins [BR:
tpra03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
123892687
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ssl1
C1_4
VWA_2
VWA
IBR
Motif
Other DBs
NCBI-GeneID:
123892687
NCBI-ProteinID:
XP_045798493
LinkDB
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Position
LG6:complement(14762760..14767955)
Genome browser
AA seq
422 aa
AA seq
DB search
MNNIAGRPLNGDVEDDDEDEANDDGLEAWERAYTEDRSWESLQEDESGLLRPIDTTAVHH
AQYRRRLRALASNAATARIQKGLIRYLYIVVDLSKAASERDFRPSRMAVIAKQVESFIRE
FFDQNPLSHVGLVTTKDGVANCLTDLGGSPESHIKALMGKLECSGDASLQNALELVHSNL
NQIPSYGHREVLILYSALSTCDPGDIMETIQKCKKSKIRCSVIGLAAEMFICKHLCQETG
GTYSVALDESHFKELILEHSPPPPAIAEYATANLIKMGFPQRAAEGSVAICTCHEEAKTG
GGYTCPRCKVRVCELPTECRICGLTLISSPHLARSYHHLFPIVPFAEISPSSQNDPSHNF
TNTCFGCQQSLLSQGNKPELSVSCPKCKQQFCLDCDIYIHESLHNCPGCESFRHSKSVTS
SQ
NT seq
1269 nt
NT seq
+upstream
nt +downstream
nt
atgaataacattgctggtagaccacttaatggagatgtagaagatgatgatgaagatgaa
gctaacgatgatgggcttgaagcatgggagagagcttatacagaagatagatcatgggag
tctttgcaggaggatgaatctggacttcttcgtcccatagataccacagccgttcaccat
gcccagtatcgtaggcgccttcgcgcccttgcttcaaatgcagctactgcgcgaattcag
aagggtttgatacgatacttatacattgtcgtggacctgtccaaggcagcttcagagagg
gactttcgaccgagtagaatggctgtcattgcaaagcaggttgagtcatttatcagggag
ttctttgatcagaatccacttagtcatgttggtttggtgactaccaaagacggggttgct
aattgcttgactgatcttggtggcagtcctgagtcccacatcaaagctttgatgggtaaa
ctagaatgctcaggtgatgcctccctacaaaatgcacttgaacttgttcatagcaatcta
aatcaaatcccatcatatggtcatcgagaagttctgattttatactcggccctcagtaca
tgtgatcctggtgatatcatggaaactatccaaaaatgcaaaaagagtaaaataagatgc
tctgtcattggtcttgctgctgaaatgtttatatgtaagcatctttgccaagaaactgga
ggaacctattcagttgcactagatgagtcccactttaaagagttaattctcgaacactct
ccaccacctccagcaatagcagagtatgctacggctaatttgattaagatgggtttccca
caaagagcagctgagggttctgttgcaatttgtacatgtcatgaagaggctaagaccgga
gggggatacacttgtccaagatgcaaagttcgtgtctgtgagcttcctactgaatgccgc
atctgtggattgacccttatttcttcgccccatttggcaaggtcatatcatcatctcttc
cctatagtaccatttgctgagatctctccatcatcccaaaatgatccaagccacaatttt
accaatacttgttttggttgtcagcaaagtctccttagtcagggaaacaagcctgagctt
tctgtctcttgcccaaaatgcaaacaacaattctgccttgattgcgacatctacattcat
gagagcttacataactgcccaggctgtgagagtttcaggcattctaagtcagttactagt
tcccaatga
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