Trifolium pratense (red clover): 123892769
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Entry
123892769 CDS
T08949
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH17-like isoform X1
KO
K15271
ATP-dependent DNA helicase HFM1/MER3 [EC:
5.6.2.4
]
Organism
tpra
Trifolium pratense (red clover)
Brite
KEGG Orthology (KO) [BR:
tpra00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
tpra03036
]
123892769
Enzymes [BR:
tpra01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
123892769
Chromosome and associated proteins [BR:
tpra03036
]
Eukaryotic type
Meiosis-specific proteins
Others
123892769
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sec63
DEAD
SNRNP200_wHTH
Helicase_C
ResIII
HHH_5
Cdd1
IMS_HHH_1
DNA_pol_lambd_f
HHH
Motif
Other DBs
NCBI-GeneID:
123892769
NCBI-ProteinID:
XP_045798587
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All DBs
Position
LG6:complement(22212395..22221877)
Genome browser
AA seq
1258 aa
AA seq
DB search
MFIPTMDSYSLKSVFDLPQPFQSCFSFRYFNSLQSECFPTCYHSDVNMVISAPTGSGKTV
LFELCILRLLSKSISSEGRFIHVKGSLKTIYIAPSKALVQEKVRDWNQKFGPWGIYCLEL
TGDNESYTPRNINEADIILTTPEKFDAVSRYGIESGGLSFFSDIALLLIDEVHLLNDPRG
AALEAIVSRIKIISGNPKMKLNPLAQVRFLALSATIPNIEDLAKWLLVPDQGIKRFGEEM
RPVKLTTKVFGYAPAKNDFLFEKRLQNYIFDILMQYSKGKSALIFCSTRKGAQEAAQRLA
QIVMNFGQSNPFIKSREQQDQLREASLSLSDKQMQSYILYGVGYHNGGLCLKDRNIVEGL
FLKGDIQVLCTTNTLAHGINLPAHTVVIKSTQHYNKEKGLYMEYDRSTILQMSGRAGRPP
FDDTGMVIIMTRKETVHLYENLLSGCEVVESQLLSSVTEHLLAEIVQLTVSDITKAIEWM
KCSYLYVRMKRNPENYAIKKGISDNRLEKHVQDICVQKVNELSQYQMVWVDEDGFLLRPL
DPGRLMTKYYLRFDTMKQIMRTPDNCSLEDALRVVCFAEEISWIQLRRNEKKLLNEINAD
KDGRLRFHILENKGKKKKRIQTREEKIFILANDCLTGDPSAHDLSLIQDMNSICSNGYRI
AKCMKDYFVHKRNFKGAVNSALLAKSFNQKLWDDSLYLLKQLPGIGMVTAKALHSMGVKS
FEALAEADPRKIEIVTGRKYPFGNHIKDSLLSLPPKVDVKLAEIESHTHGKSKLVVTLTR
ISQSGQSAKRHYADMIIGSEEDNTILFHEKIRVDQFSSPYSTTVLVPTSQGNQTIKANFI
FEEYIGIDVHQKLFFMKESNSNVILKRNRKQASFPPPEEIFVIEDDDRDLTHIPQEETST
LSKDMDKDESNSIPTFDLFGEMFEEDEHALEVEEEKFKILNEKTVFDHIREKAKNFSLLS
SFENIRCPSVEVLLGRNHAREKWSNQGREKRSYDGHEVVVLDDDDNGVIGQTDVNFPADL
RNAEHEDINLCLTLNDHNIAESSDNRSSVVDAGVFFPEPKASYENATEETVFDHIKRKSK
DFPQIRKLDCADTEIKKTEFFSKNYPISLKAALGMVPETNFSDMVSGSMLTSDMGTADVQ
NYSSGFQVGTSVKRKKLEDSCCTDGVVNISKGISSTNSVQSSNFDPIVSFPMPKEKTWSS
DSGSFEQSSKKQRCTVVESKEEKLNSCEIRRQCCSLETNGQMNQIEPCLGFKSVFSFL
NT seq
3777 nt
NT seq
+upstream
nt +downstream
nt
atgtttatcccaactatggattcatattctttgaagtccgtgttcgatttgcctcaacct
tttcaatcatgttttagtttcagatattttaattcacttcagagtgaatgctttcctacc
tgttaccactccgatgtaaacatggtcatctctgctccgaccggaagtggtaaaacagta
ctctttgagctttgcattttgaggcttctctccaagtccatatcatccgagggaagattc
atacatgtgaagggatctcttaaaacaatctatattgccccatctaaggctttagttcag
gagaaggtccgtgattggaatcagaaatttggaccatgggggatatattgcctggagctg
acaggtgacaatgaatcttacactccaagaaatataaatgaagcagatatcattctaacc
actccagagaaatttgatgcagtgtcacgatatggtatagaaagcggtggtttgagtttt
ttcagtgacatagcacttctactaattgatgaagttcatcttctgaatgatccacgtgga
gctgcgctggaagcaattgttagcagaataaaaattatttctggcaatccaaaaatgaaa
ttaaatcctttggctcaggtccgcttcctcgctttatcagcaacaattccaaatattgag
gatctagctaagtggcttctggttcctgaccaagggatcaaaaggtttggagaagaaatg
aggccagtaaagctgacaaccaaggtttttggctatgctccagccaagaatgactttcta
tttgagaagcgccttcaaaactatatttttgatattctcatgcaatactctaaagggaaa
tctgcgcttatattttgttcaacaagaaaaggagctcaagaagcagctcagagacttgct
caaattgtcatgaattttggtcaatcaaatcctttcattaagagcagagagcagcaagat
cagctgagggaggcttctctttcacttagtgacaaacaaatgcaatcatatattctatat
ggtgttggttatcacaatggcgggctttgcctcaaagatcgcaatattgtggaaggtctt
tttctcaaaggtgacatccaagtactatgcactacaaatacactagcccatggaatcaac
ctcccagcgcatacagtggttattaaatcaacacaacactacaacaaggaaaaaggtctt
tacatggaatatgaccgctccactatattgcagatgtctggaagggcaggccgaccacca
tttgatgatacaggcatggttataatcatgacaaggaaagaaacggttcatttgtatgag
aatctcttaagcgggtgtgaagtagtggaatcgcagttactctcatctgtgacagagcat
ttacttgcggaaatagttcaactgacagtatctgatattacaaaagcaattgaatggatg
aaatgctcatacttgtatgttcgaatgaaaaggaatcccgagaactatgcaattaagaaa
ggaatttctgacaatcgtttagagaagcatgtgcaagatatttgtgttcagaaagttaac
gagttatcacagtatcaaatggtctgggttgatgaagatggtttcctcttgagaccgtta
gatcctggaaggttaatgacaaagtactatttgagatttgacaccatgaaacagataatg
cggactcctgataattgcagtttagaagatgctcttcgtgttgtatgctttgctgaagaa
atttcatggatacagctcagacgcaatgaaaagaagctcttaaatgagatcaatgcagac
aaagatggtcggcttcgatttcatattcttgaaaataaagggaaaaagaaaaagagaatt
caaacaagagaagagaagatatttattttagcaaatgactgcttaacaggtgatccttct
gcgcatgacctatctctgattcaggacatgaattctatatgttcgaatggatatagaatt
gcaaaatgcatgaaagactattttgttcataaaaggaatttcaaaggagctgtaaattca
gcccttttagcaaaatcatttaaccagaaactttgggatgatagtctataccttttaaaa
cagttgcctggaattgggatggttacagcaaaggcactgcattcaatgggagttaaatca
ttcgaagcacttgctgaagctgatccaaggaaaatagagatagtgactggtcgaaaatac
ccatttggtaaccatattaaggattctctcttatcgctacctccaaaagttgatgtgaag
cttgcagaaatcgaaagccatacacatggaaagtccaagctagtagtaacactgactagg
atatcacagtcagggcagtcagcaaaacgacattatgctgatatgatcattggttcggaa
gaagacaacactattctctttcatgaaaaaattagggttgatcagttctccagcccatat
agcacaacagttcttgtgcccacctcacaagggaatcagactatcaaagccaattttata
tttgaggaatacattggtattgatgtccaccaaaagcttttctttatgaaagagagcaat
tcaaatgtgattttaaaaagaaacaggaagcaagcttcttttcctccacctgaagagata
tttgtaatagaagatgacgacagagatctaactcatataccgcaggaagaaacaagcact
ttgagcaaggatatggataaggatgaaagtaattccattcctactttcgatcttttcggt
gaaatgtttgaggaagatgagcatgctcttgaggttgaagaagagaaattcaaaatcctt
aatgagaaaacagtatttgatcacatacgggagaaagccaaaaacttttctctcctgtct
tcatttgaaaatattcgctgtccatcagtggaggtccttcttggaagaaatcatgcccgt
gaaaagtggtctaaccaaggtcgtgagaagaggtcttacgatgggcatgaggtagttgtc
ttggatgatgatgacaatggagttataggacaaactgatgtcaattttcctgctgatctc
agaaatgcagaacacgaagatatcaacctttgtctgactttaaatgatcataatatagct
gaaagctcagataacaggagcagtgtagttgatgcaggtgttttcttccctgaaccgaaa
gcaagttatgaaaatgcaactgaagaaacagtatttgaccatataaagagaaaatctaag
gattttccccagattaggaagcttgattgcgcggacacagaaatcaagaaaactgaattc
ttctcaaagaattatcccatttctttgaaagctgctttaggtatggtaccagagacaaat
ttctcagacatggtctctggtagtatgcttacttcagatatgggaactgctgatgtgcaa
aactactcatctggttttcaagttggtacttctgttaaacgcaagaaattggaagattca
tgttgcacggatggagtagttaatatttctaagggcatttcaagcaccaattctgttcaa
tcgtccaattttgatcctattgttagttttccaatgcctaaagagaaaacttggtcgtca
gattctggaagctttgaacagagcagtaagaagcagcgttgcacggtggtagaatcaaaa
gaagagaagttaaattcatgtgaaataagaagacagtgctgttctttggaaactaatgga
caaatgaatcaaatagagccatgtctcgggtttaaaagtgtattctcttttctgtga
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