Trifolium pratense (red clover): 123892900
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Entry
123892900 CDS
T08949
Name
(RefSeq) cell division cycle protein 48 homolog
KO
K13525
transitional endoplasmic reticulum ATPase
Organism
tpra
Trifolium pratense (red clover)
Pathway
tpra04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
tpra00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
123892900
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tpra03019
]
123892900
03009 Ribosome biogenesis [BR:
tpra03009
]
123892900
04131 Membrane trafficking [BR:
tpra04131
]
123892900
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
tpra04147
]
123892900
Messenger RNA biogenesis [BR:
tpra03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Ran-mediated transport factors
123892900
Ribosome biogenesis [BR:
tpra03009
]
Eukaryotic type
Pre-60S particles
Ribosome quality control proteins
123892900
Membrane trafficking [BR:
tpra04131
]
SNARE
SNARE associated proteins
Others
123892900
Autophagy
Aggrephagy
Other aggrephagy associated proteins
123892900
Exosome [BR:
tpra04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
123892900
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA
AAA_lid_3
CDC48_N
RuvB_N
AAA_16
AAA_2
AAA_5
CDC48_2
AAA_22
AAA_33
AAA_14
TIP49
NPHP3_N
RNA_helicase
AAA_17
Mg_chelatase
nSTAND3
AAA_28
Parvo_NS1
AAA_18
ATPase_2
IstB_IS21
ABC_tran
Vps4_C
AAA_7
AAA_lid_PRS2_C
Viral_helicase1
NB-ARC
AAA_24
TsaE
Zeta_toxin
NACHT
DUF815
Zot
Motif
Other DBs
NCBI-GeneID:
123892900
NCBI-ProteinID:
XP_045798731
LinkDB
All DBs
Position
LG6:7781010..7785612
Genome browser
AA seq
808 aa
AA seq
DB search
MANQPESSDAKGNKRDFSTAILERKKAPNRLVVDEAVNDDNSVVALHPETMEKLQLFRGD
TILIKGKKRKDTICIALADDTCEEPKIRMNKVVRNNLRVRLGDVVSVHQCADVKYGKRVH
ILPVDDTIEGVTGNLFDAYLKPYFLEAYRPVRKGDFFLVRGGMRSVEFKVIETDPHEYCV
VAPDTEIFCEGEPIKREDENRLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVK
PPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKN
APSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVMGATNRPNSIDPA
LRRFGRFDREIDIGVPDEIGRLEVLRIHTKNMKLAEDVDLEKISKETHGYVGADLAALCT
EAALQCIREKMDVIDLEDETIDAEILNSMAVTNEHFATALGSSNPSALRETVVEVPNCSW
DDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQ
ANFISIKGPELLTMWFGESEANVREIFDKARGSAPCVLFFDELDSIATQRGSSVGDAGGA
ADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEDSRHQI
FKACLRKSPIAKDVDIRALAKYTQGFSGADITEICQRACKYAIRENIEKDIEKERKRSEN
PEAMEEDVEDEVAEIKAAHFEESMKYARRSVSDADIRKYQAFAQTLQQSRGFGTEFRFAD
SGTSGAAATGASDPFTSAGGADDDDLYS
NT seq
2427 nt
NT seq
+upstream
nt +downstream
nt
atggcgaatcaacctgaatcctccgatgctaagggaaataagcgtgattttagtactgcg
attctggaacgcaaaaaggcacctaatcgattagttgttgatgaagctgttaacgatgat
aactccgttgttgctcttcatcctgaaactatggagaagcttcaactcttccgcggtgac
actatattgatcaagggaaagaaaaggaaagatactatttgtattgcacttgctgatgat
acatgtgaggaaccaaagataagaatgaacaaggttgtgagaaacaatcttagggttagg
cttggagatgttgtttcggtgcatcaatgtgctgatgtcaaatatggaaagagagttcac
attcttcctgtggacgatactattgaaggagtgacgggcaatctctttgacgcatactta
aaaccttatttcctggaggcatatcgaccagtgaggaaaggtgacttcttccttgtgaga
gggggaatgagaagcgtagaattcaaggttattgaaacagacccacatgagtattgtgtt
gtggccccggacacagagatcttctgtgaaggagagcccattaaaagggaagatgagaat
cgattagatgaggttggttacgacgatgttggcggtgtaagaaaacagatggcccaaatt
agggaacttgtggaacttcccctgaggcacccacagttgttcaagtctattggtgtcaaa
ccaccaaaagggattctgttgtatggacccccgggatctggaaagactttaattgctaga
gcagttgcaaatgaaacaggtgccttctttttctgcattaatggccctgagataatgtca
aaactcgctggtgagagtgaaagcaatttaagaaaggcattcgaggaagcagagaagaat
gcaccgtcgataatcttcatcgacgagatagattccatagctcctaagcgagagaaaact
catggtgaagttgagaggaggatagtttcccagctattgactctcatggatggtcttaaa
tcacgcgcccatgtaattgttatgggagccacaaataggcccaatagcattgaccctgca
cttaggaggtttggaagatttgatcgggagattgatattggtgttcccgatgaaatcggg
cgactcgaagttctacgaattcatacaaaaaatatgaaacttgctgaagatgttgattta
gaaaagatttctaaggaaacacatggttatgttggtgctgatctagctgctttatgtacc
gaagcagcgcttcaatgcatcagagaaaaaatggacgtgattgacttggaagatgagacc
attgatgctgaaattttgaactccatggcagtgacaaatgagcattttgctactgctctt
ggatcaagcaatccttctgctctccgtgaaacagttgttgaagtgccaaattgtagctgg
gatgatattggtggtcttgaaaatgttaagagagaactccaagagactgttcaatatcca
gtggaacaccctgaaaagtttgagaagtttggaatgtctccttcaaagggagttcttttc
tatggtcctcctggctgtggtaaaacacttctggcaaaagctattgccaatgaatgccag
gcaaacttcatcagtatcaaaggtcctgagctactcactatgtggtttggagaaagtgag
gcaaatgtcagggaaatttttgacaaggctcgtggttctgcgccatgtgtcctgttcttt
gatgaactcgactccattgccactcagagaggtagtagtgtaggagatgctgggggtgct
gctgacagggttttgaaccagctgctaacagaaatggatgggatgtcggcaaagaaaaca
gtttttatcattggcgccactaatcgaccggacattatagacccagctcttctgcgtcca
ggccgtctagaccagttgatttatatccccctcccagatgaagattcccgtcatcagata
tttaaagcttgcttgagaaaatcccccatcgcaaaagacgttgatattagagctcttgca
aagtatacccaaggatttagcggtgctgatattactgagatttgccagcgtgcatgcaaa
tatgccataagagagaacattgagaaggacattgaaaaagagagaaagagaagcgagaac
cctgaggccatggaagaggatgttgaagatgaagtagctgaaattaaggcagctcacttt
gaggaatcgatgaaatatgcaaggaggagtgtgagtgatgccgacattcgcaagtatcaa
gcatttgcccaaacattgcagcagtccagagggtttggaactgagtttaggtttgcagat
tctggaaccagtggtgctgccgctacaggtgcatctgacccatttacatctgctggcgga
gctgatgacgacgatctctacagttaa
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