Trifolium pratense (red clover): 123893177
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Entry
123893177 CDS
T08949
Name
(RefSeq) sm-like protein LSM4
KO
K12623
U6 snRNA-associated Sm-like protein LSm4
Organism
tpra
Trifolium pratense (red clover)
Pathway
tpra03018
RNA degradation
tpra03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
tpra00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
123893177
09123 Folding, sorting and degradation
03018 RNA degradation
123893177
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tpra03019
]
123893177
03041 Spliceosome [BR:
tpra03041
]
123893177
Messenger RNA biogenesis [BR:
tpra03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
123893177
mRNA degradation factors
5'-3' decay
Lsm complex
123893177
Spliceosome [BR:
tpra03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
123893177
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
LSM
SM-ATX
Motif
Other DBs
NCBI-GeneID:
123893177
NCBI-ProteinID:
XP_045799059
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Position
LG6:complement(4331277..4334507)
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AA seq
155 aa
AA seq
DB search
MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY
IRGNTIKYLRVPDEVIDKVQEETKSRTDRKPPGVGRGRGRGGGREEGAGSGAGGRQPKGI
GRGFDDGGARGAGGRGRGSQGGKPGGSRGAGRGRG
NT seq
468 nt
NT seq
+upstream
nt +downstream
nt
atgcttcctctttcacttcttaagactgcacaaggccaccctatgttggtggagctgaaa
aatggagagacttataatggtcacttggttaattgtgatacatggatgaacattcatctc
cgggaagttatttgtacctctaaagatggagacagattttggcggatgcccgagtgttat
atacgaggcaatacgattaagtaccttcgtgttcctgatgaggttattgacaaagttcaa
gaagaaaccaagagccgcacagatcgcaagccacctggcgtgggacgtggtaggggaaga
gggggaggtagggaggaaggtgctggttctggtgctggtggacgccaaccaaaaggtatt
gggcgtggttttgatgatggtggtgctagaggagctggaggccgaggtaggggtagccaa
ggtggaaagcctggaggaagcagaggtgctggacgaggtagaggttga
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