KEGG   Trifolium pratense (red clover): 123893177
Entry
123893177         CDS       T08949                                 
Name
(RefSeq) sm-like protein LSM4
  KO
K12623  U6 snRNA-associated Sm-like protein LSm4
Organism
tpra  Trifolium pratense (red clover)
Pathway
tpra03018  RNA degradation
tpra03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:tpra00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    123893177
  09123 Folding, sorting and degradation
   03018 RNA degradation
    123893177
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:tpra03019]
    123893177
   03041 Spliceosome [BR:tpra03041]
    123893177
Messenger RNA biogenesis [BR:tpra03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     123893177
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     123893177
Spliceosome [BR:tpra03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    123893177
SSDB
Motif
Pfam: LSM SM-ATX
Other DBs
NCBI-GeneID: 123893177
NCBI-ProteinID: XP_045799059
LinkDB
Position
LG6:complement(4331277..4334507)
AA seq 155 aa
MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY
IRGNTIKYLRVPDEVIDKVQEETKSRTDRKPPGVGRGRGRGGGREEGAGSGAGGRQPKGI
GRGFDDGGARGAGGRGRGSQGGKPGGSRGAGRGRG
NT seq 468 nt   +upstreamnt  +downstreamnt
atgcttcctctttcacttcttaagactgcacaaggccaccctatgttggtggagctgaaa
aatggagagacttataatggtcacttggttaattgtgatacatggatgaacattcatctc
cgggaagttatttgtacctctaaagatggagacagattttggcggatgcccgagtgttat
atacgaggcaatacgattaagtaccttcgtgttcctgatgaggttattgacaaagttcaa
gaagaaaccaagagccgcacagatcgcaagccacctggcgtgggacgtggtaggggaaga
gggggaggtagggaggaaggtgctggttctggtgctggtggacgccaaccaaaaggtatt
gggcgtggttttgatgatggtggtgctagaggagctggaggccgaggtaggggtagccaa
ggtggaaagcctggaggaagcagaggtgctggacgaggtagaggttga

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